Click here to switch to the map view.

The map label for this gene is ompW2 [H]

Identifier: 94312522

GI number: 94312522

Start: 3901592

End: 3902452

Strand: Reverse

Name: ompW2 [H]

Synonym: Rmet_3591

Alternate gene names: 94312522

Gene position: 3902452-3901592 (Counterclockwise)

Preceding gene: 94312523

Following gene: 94312518

Centisome position: 99.35

GC content: 62.95

Gene sequence:

>861_bases
ATGCATAACAAACGCCTCTCGCTGGCCCGTCGGCTTTCGATCGCTGCAGCCTTTCTCGCCTGCAGCACCTTCATGGCCAC
CACCGCGCACGCGCAAAAGGCCGGGGACAACGTCGTATCCGCGGGCTGGTTCCACATCGAGACCTTCGGCACCAGCGGCC
CGTTGACCACAACCCTGCTCGATGTGCCAATCAACTATCCGCTTGGACTGCCGAGGTCGTTCTCGGCGCCAGGCAGTGGC
CTGTCGACGTCGAATGCCGACACGCTCGGCTTGACGTTCAGCCACTTCGTCACCGACAACATCGCGATCACAGCCGTGGG
CGGCATTCCGCCCGAGTTCAAGATCTACGGACACGGCTATCTGATTCCGCCGGGCCCGGCCGGCGCGCTGGGTCACCAGA
GCCTCGGCGACCCGTCGCTGAATCCGATCATCACGCGCGCGCGTCAGTGGAGCCCGGCGGCTATGGTGCAGTATCACTTC
CGTGCTCCCGATGTGACGTTCCGCCCGTTTGTCGGTGTTGGTGTCTCATACAACTTCTTCACCAATATCGACGTCAATCC
GGCGTTCGCCGCATCGGTGAACAATAACCTCGGCGCGATCCTGGCTGCGGGTGCGGGTATTCCGGGTCCGACGTCGGTCC
ACGCCGATGCGTCGTCGTCGTGGGCGCCGGTCTTCAATGTCGGCGGCACCTACAACTTCACCGAGCATTGGGGTGTCACC
GGGGCGGTCACGTACATCCCGCTCAAGAGCGAATCGACGATGACGATCAAGGCGTCGGACGGCACCGTGCTGTCGACCTC
CAAGACGACACTGCGGCCAAACCCGCTGGTGTTCTTCCTCGCGGCGACCTACAAGTTCTGA

Upstream 100 bases:

>100_bases
TCATGTTCACAGGCGGCGTGTTCGGCTTCCTCGAAAACCGCACCACCGGCCCGTACTTCACGGTCGGCGCCTTCGTGCAA
TAACGACCCAGGGAGCCAAC

Downstream 100 bases:

>100_bases
CCGACGTCAGCCACAACGCAAAAAGGGCGAAGCCTTGAAAGCTTCGCCCTTTTTTGCTGAACCGAAACGATGACTTACTG
CGTCGTCGTTGTCTGCGGTG

Product: Porin, OmpW family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MHNKRLSLARRLSIAAAFLACSTFMATTAHAQKAGDNVVSAGWFHIETFGTSGPLTTTLLDVPINYPLGLPRSFSAPGSG
LSTSNADTLGLTFSHFVTDNIAITAVGGIPPEFKIYGHGYLIPPGPAGALGHQSLGDPSLNPIITRARQWSPAAMVQYHF
RAPDVTFRPFVGVGVSYNFFTNIDVNPAFAASVNNNLGAILAAGAGIPGPTSVHADASSSWAPVFNVGGTYNFTEHWGVT
GAVTYIPLKSESTMTIKASDGTVLSTSKTTLRPNPLVFFLAATYKF

Sequences:

>Translated_286_residues
MHNKRLSLARRLSIAAAFLACSTFMATTAHAQKAGDNVVSAGWFHIETFGTSGPLTTTLLDVPINYPLGLPRSFSAPGSG
LSTSNADTLGLTFSHFVTDNIAITAVGGIPPEFKIYGHGYLIPPGPAGALGHQSLGDPSLNPIITRARQWSPAAMVQYHF
RAPDVTFRPFVGVGVSYNFFTNIDVNPAFAASVNNNLGAILAAGAGIPGPTSVHADASSSWAPVFNVGGTYNFTEHWGVT
GAVTYIPLKSESTMTIKASDGTVLSTSKTTLRPNPLVFFLAATYKF
>Mature_286_residues
MHNKRLSLARRLSIAAAFLACSTFMATTAHAQKAGDNVVSAGWFHIETFGTSGPLTTTLLDVPINYPLGLPRSFSAPGSG
LSTSNADTLGLTFSHFVTDNIAITAVGGIPPEFKIYGHGYLIPPGPAGALGHQSLGDPSLNPIITRARQWSPAAMVQYHF
RAPDVTFRPFVGVGVSYNFFTNIDVNPAFAASVNNNLGAILAAGAGIPGPTSVHADASSSWAPVFNVGGTYNFTEHWGVT
GAVTYIPLKSESTMTIKASDGTVLSTSKTTLRPNPLVFFLAATYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=281, Percent_Identity=25.2669039145907, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 30091; Mature: 30091

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNKRLSLARRLSIAAAFLACSTFMATTAHAQKAGDNVVSAGWFHIETFGTSGPLTTTLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEECCCCCEEEEEE
DVPINYPLGLPRSFSAPGSGLSTSNADTLGLTFSHFVTDNIAITAVGGIPPEFKIYGHGY
ECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCEEEEEECCCCCCEEEEECCE
LIPPGPAGALGHQSLGDPSLNPIITRARQWSPAAMVQYHFRAPDVTFRPFVGVGVSYNFF
EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCEECCEEECCEEEEEE
TNIDVNPAFAASVNNNLGAILAAGAGIPGPTSVHADASSSWAPVFNVGGTYNFTEHWGVT
EECCCCCEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCEEEECCCCCCCHHHCCCC
GAVTYIPLKSESTMTIKASDGTVLSTSKTTLRPNPLVFFLAATYKF
EEEEEEEECCCCEEEEEECCCEEEECCCCEECCCCEEEEEEEEECC
>Mature Secondary Structure
MHNKRLSLARRLSIAAAFLACSTFMATTAHAQKAGDNVVSAGWFHIETFGTSGPLTTTLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEECCCCCEEEEEE
DVPINYPLGLPRSFSAPGSGLSTSNADTLGLTFSHFVTDNIAITAVGGIPPEFKIYGHGY
ECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCEEEEEECCCCCCEEEEECCE
LIPPGPAGALGHQSLGDPSLNPIITRARQWSPAAMVQYHFRAPDVTFRPFVGVGVSYNFF
EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCEECCEEECCEEEEEE
TNIDVNPAFAASVNNNLGAILAAGAGIPGPTSVHADASSSWAPVFNVGGTYNFTEHWGVT
EECCCCCEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCEEEECCCCCCCHHHCCCC
GAVTYIPLKSESTMTIKASDGTVLSTSKTTLRPNPLVFFLAATYKF
EEEEEEEECCCCEEEEEECCCEEEECCCCEECCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]