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The map label for this gene is soxF [H]

Identifier: 94312357

GI number: 94312357

Start: 3705014

End: 3706294

Strand: Reverse

Name: soxF [H]

Synonym: Rmet_3426

Alternate gene names: 94312357

Gene position: 3706294-3705014 (Counterclockwise)

Preceding gene: 94312358

Following gene: 94312356

Centisome position: 94.35

GC content: 68.31

Gene sequence:

>1281_bases
ATGCAAAGACGCTCTGTCCTACAGGCCGCCCTGGCCGGTGTCGCGGCCACCACGCTCGGCATGTTGACGCCGCGTCAGGC
GCGCGCAGCAACCGCAGCGAAGGTCGTGGTGGTCGGCGGTGGCTTTGGCGGTGCCACGGCCGCACGCTACCTGCGCACCT
GGAGTCACGGTGCTGTCGACGTCACGCTGATCGAGCCCGACGAGGCGTTTGTGTCCTGCCCGCTGTCGAATCTCGTTGTC
GCCGGCTATCGCCAGATGGCCGACATCACGCTGCCCTACGACACGCTGGTGAGTCGTCACGGCGTGAAGCACGTGCGCGA
CACGGTCACGGCGATCGACCCGGCGGCACGCACTGTCCGGGTGGCGGGCGGAGGGACGCTGCCGTATGACCGCCTGATCC
TGTCCCCCGGCGTGGAGATGCAGTCCAGCGCGATCCCAGGTCTGGCACGTCCTGGCGGGGATCAGATCGTGCACGCCTGG
AAGGCCGGTCCGCAGACCGACGTGCTGCGCCGCCAGCTCGCGGCGATGCCCGATGGCGGTACGTTCGCGATCACGATCCC
GCTGGCGCCGTATCGTTGCCCACCCGGGCCGTACGAGCGGGCCTGCCTGGTTGCCGACTATCTCAAGCAACACAAGCCGC
GCAGCAAGGTGCTCGTGCTCGACGCGAACCCGGACATCACGTCGAAGGGCGCGTTGTTCCGCAAGGTCTGGGAGACACGC
TACAAGGGGATGATCGAGTACCGGCCGCAGTTCGAGACCGTCGATGTCGATCCGGCCACACGCACGATCCGCTTTGACGT
GCAGGACGACGAGCGGGCCGACGTCATCAACCTGCTGCCACCGCAGCGCGCCGGCGCCATCGCCGTGGCCAGCGGTCTGG
CGACGGCCAACGGCCGCTGGTGCGAGGTCGACTTCCTGACCATGGCGTCGACCGTGGCGCCTGACATCCACGTCCTTGGC
GACGCCGTCCAGATCGCGCCGCTGATGCCCAAGTCCGGCACGATGGCCAATCAGCACGGCAAGGTGGCCGCCGCCGCGAT
CCTGCGGCTGCTGGCCGGTCAGGATCCGGACCCGGAGCCGGTCTACACCAACACCTGCTACAGCTTCACGTCGTCGAACG
AGGCCATCCACGTGGCCAGCGTGCATCGCTACGATGCCGGCGAGAAAACCATGCTGACCGTGCCGGGGTCCGGCGGGCTG
TCCGTCGCGCCAAGCAGGCGGGAAGGTGAGTACGGACTTGCCTGGGCCCACAGCATCTGGGCCGACATGCTGGGCGCCTG
A

Upstream 100 bases:

>100_bases
CGGCAAGCGCTCCGGGACCGTGATGCCGCAAATCGCCAAGGGCTATAGCGACGCGCAGATCCTCGCGATGGCCGCGTGGT
TCGCCGACCAGAAATAGCCC

Downstream 100 bases:

>100_bases
CTCACTGACAGAGTGCCGGCTGCCCCACACGCCCCGCTCACCCTACACGCCGCAAAACCGCAGGATCGTGCAACGCCGCG
CCGCCACGGGCTGATACGCT

Product: putative sulfide dehydrogenase flavocytochrome c oxidoreductase protein

Products: NA

Alternate protein names: FCSD; Flavocytochrome c flavoprotein subunit; FC [H]

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MQRRSVLQAALAGVAATTLGMLTPRQARAATAAKVVVVGGGFGGATAARYLRTWSHGAVDVTLIEPDEAFVSCPLSNLVV
AGYRQMADITLPYDTLVSRHGVKHVRDTVTAIDPAARTVRVAGGGTLPYDRLILSPGVEMQSSAIPGLARPGGDQIVHAW
KAGPQTDVLRRQLAAMPDGGTFAITIPLAPYRCPPGPYERACLVADYLKQHKPRSKVLVLDANPDITSKGALFRKVWETR
YKGMIEYRPQFETVDVDPATRTIRFDVQDDERADVINLLPPQRAGAIAVASGLATANGRWCEVDFLTMASTVAPDIHVLG
DAVQIAPLMPKSGTMANQHGKVAAAAILRLLAGQDPDPEPVYTNTCYSFTSSNEAIHVASVHRYDAGEKTMLTVPGSGGL
SVAPSRREGEYGLAWAHSIWADMLGA

Sequences:

>Translated_426_residues
MQRRSVLQAALAGVAATTLGMLTPRQARAATAAKVVVVGGGFGGATAARYLRTWSHGAVDVTLIEPDEAFVSCPLSNLVV
AGYRQMADITLPYDTLVSRHGVKHVRDTVTAIDPAARTVRVAGGGTLPYDRLILSPGVEMQSSAIPGLARPGGDQIVHAW
KAGPQTDVLRRQLAAMPDGGTFAITIPLAPYRCPPGPYERACLVADYLKQHKPRSKVLVLDANPDITSKGALFRKVWETR
YKGMIEYRPQFETVDVDPATRTIRFDVQDDERADVINLLPPQRAGAIAVASGLATANGRWCEVDFLTMASTVAPDIHVLG
DAVQIAPLMPKSGTMANQHGKVAAAAILRLLAGQDPDPEPVYTNTCYSFTSSNEAIHVASVHRYDAGEKTMLTVPGSGGL
SVAPSRREGEYGLAWAHSIWADMLGA
>Mature_426_residues
MQRRSVLQAALAGVAATTLGMLTPRQARAATAAKVVVVGGGFGGATAARYLRTWSHGAVDVTLIEPDEAFVSCPLSNLVV
AGYRQMADITLPYDTLVSRHGVKHVRDTVTAIDPAARTVRVAGGGTLPYDRLILSPGVEMQSSAIPGLARPGGDQIVHAW
KAGPQTDVLRRQLAAMPDGGTFAITIPLAPYRCPPGPYERACLVADYLKQHKPRSKVLVLDANPDITSKGALFRKVWETR
YKGMIEYRPQFETVDVDPATRTIRFDVQDDERADVINLLPPQRAGAIAVASGLATANGRWCEVDFLTMASTVAPDIHVLG
DAVQIAPLMPKSGTMANQHGKVAAAAILRLLAGQDPDPEPVYTNTCYSFTSSNEAIHVASVHRYDAGEKTMLTVPGSGGL
SVAPSRREGEYGLAWAHSIWADMLGA

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI10864011, Length=344, Percent_Identity=24.1279069767442, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR015323
- InterPro:   IPR015904
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09242 FCSD-flav_bind; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 45452; Mature: 45452

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRSVLQAALAGVAATTLGMLTPRQARAATAAKVVVVGGGFGGATAARYLRTWSHGAVD
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEECCCCHHHHHHHHHHCCCCCEE
VTLIEPDEAFVSCPLSNLVVAGYRQMADITLPYDTLVSRHGVKHVRDTVTAIDPAARTVR
EEEECCCCCEEECCHHHHHHHHHHHHHEEECCHHHHHHHCCHHHHHHHHHHCCCCCEEEE
VAGGGTLPYDRLILSPGVEMQSSAIPGLARPGGDQIVHAWKAGPQTDVLRRQLAAMPDGG
EECCCCCCHHHEEECCCCCCHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
TFAITIPLAPYRCPPGPYERACLVADYLKQHKPRSKVLVLDANPDITSKGALFRKVWETR
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
YKGMIEYRPQFETVDVDPATRTIRFDVQDDERADVINLLPPQRAGAIAVASGLATANGRW
HCCEEEECCCCEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCE
CEVDFLTMASTVAPDIHVLGDAVQIAPLMPKSGTMANQHGKVAAAAILRLLAGQDPDPEP
EEEEHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
VYTNTCYSFTSSNEAIHVASVHRYDAGEKTMLTVPGSGGLSVAPSRREGEYGLAWAHSIW
CCCCCEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCEECCCCCCCCCCCHHHHHHH
ADMLGA
HHHHCC
>Mature Secondary Structure
MQRRSVLQAALAGVAATTLGMLTPRQARAATAAKVVVVGGGFGGATAARYLRTWSHGAVD
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEECCCCHHHHHHHHHHCCCCCEE
VTLIEPDEAFVSCPLSNLVVAGYRQMADITLPYDTLVSRHGVKHVRDTVTAIDPAARTVR
EEEECCCCCEEECCHHHHHHHHHHHHHEEECCHHHHHHHCCHHHHHHHHHHCCCCCEEEE
VAGGGTLPYDRLILSPGVEMQSSAIPGLARPGGDQIVHAWKAGPQTDVLRRQLAAMPDGG
EECCCCCCHHHEEECCCCCCHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
TFAITIPLAPYRCPPGPYERACLVADYLKQHKPRSKVLVLDANPDITSKGALFRKVWETR
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
YKGMIEYRPQFETVDVDPATRTIRFDVQDDERADVINLLPPQRAGAIAVASGLATANGRW
HCCEEEECCCCEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCE
CEVDFLTMASTVAPDIHVLGDAVQIAPLMPKSGTMANQHGKVAAAAILRLLAGQDPDPEP
EEEEHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
VYTNTCYSFTSSNEAIHVASVHRYDAGEKTMLTVPGSGGLSVAPSRREGEYGLAWAHSIW
CCCCCEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCEECCCCCCCCCCCHHHHHHH
ADMLGA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8390993; 1649169; 7939681 [H]