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The map label for this gene is yfdE [H]

Identifier: 94312345

GI number: 94312345

Start: 3694153

End: 3695391

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_3414

Alternate gene names: 94312345

Gene position: 3695391-3694153 (Counterclockwise)

Preceding gene: 94312346

Following gene: 94312344

Centisome position: 94.08

GC content: 64.41

Gene sequence:

>1239_bases
ATGATTGCATTGAACGGTATCCGCGTACTCGACCTGAGCAAGGTGCTAGCCGGTCCTTTGTGTGGCCAGTACCTGGGGGA
GCTTGGCGCAGAAGTCATCAAGGTTGAACCGGTTGGCCGTGGCGACGACACACGGGCATGGCTGCCGCAGGACCGAGGCC
AGTCAGCGACCTTCCTCGCGGTCAACCACAACAAGCGCAGCCTCGCTGTCGATCTGAAGACCGCCGAGGGCAGGCAGATC
GTGCAGACGTTGGCAGCAAAATCGGACGTGGTCCTGCAGGGCTTCGGCAGCGGTGCCGCCGCACGGCTGGGCGTGGACTA
CAAGACGCTGTCCGGCATGAACCCGTCGCTGATCTACTGCGAGATTTCCGGATACGGAAGAACGGGCCCGCTAGGCCAGG
AACCTGGTTACGACGTGATGCTGCAGGCGTTCAGCGGCATGGTCAGCACCATGGGCGAAGCGGGTGGCAAGCTGGCGCGC
GCCAGCTTCTCGCCGGTAGACCTGGGGACGGGCATGCACGCGTTCAGCGGCATCCTGGCGGCCCTGCTCGAGAGACAGAA
GACCGGGCGAGGCATGTTCCTGGAGGTGTCGTTGCTCGACACAGCCATGGGGTTCATGAGCTACCTGGCACAGAACTACT
GGTGCAGCGGGAAGCTGCCGCGCCCAATGGGAACCGCCCATCCCGCCATGGCGCCATACCAGGTATTCGAGGCATCGGAC
GGCCCCATCATGATTGGCGTTGGCAATGATGCCCAGTGGCGGCGCTTTTGCCCGGTCGCCGGACTCGACGATGTCATCGA
CGCACCCAAGTTCGCGACCAATGCCGCGCGCGTCGCGCATTTCGATGAAACCGTGGCGATGGTGCAGGCGCGCATTGCGC
TGCAGCCAGTCGCGCACTGGATCGAGGCATTGCGCAAGGCGGGTGTGGCTTGCTCTCCCATTCACACGCTCGGCGACGCA
TTGGCGCATCAGCAGGTTGCGGCACGCGAACTGATTGTCGAATCCGATCACCCCGTGCTTGGCAAGGTTCGCAACGTTGG
CTTGCCGATCCGCTTTGGCGAGGCGCCACGTGGTGCGCATCGCGCTCCGCCGCTGCTGGGCCAGCACACCGACGAGGTAC
TCGGCGAGGCTGGCTACGGCCCCGATGCTATTGCCGATTTCAAGGCGCGAGGCGTGATCGCCACCGCCAACCTGCCGCAG
GCTGATTCCCAGCCGGCCGCGGCCCCTCTCACTGCATGA

Upstream 100 bases:

>100_bases
CCATAGGCATCAAGCCCGAATAGAGCGCACCGGCAACGCGGGCCGCCCGACGGCGGTCAGTCGCAGTCCTTGAAGCGGCA
TCAGCATTAGACATACATCC

Downstream 100 bases:

>100_bases
GTGGAACCCCATGACATCCGTTTCCTACGAGGTCCGCGACAACATCGCGGAGATCCTTCTTGATAGCCCTCCCGTCAACG
CGCTGAACGAGGCGATGATC

Product: bile acid-inducible operon protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MIALNGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGRGDDTRAWLPQDRGQSATFLAVNHNKRSLAVDLKTAEGRQI
VQTLAAKSDVVLQGFGSGAAARLGVDYKTLSGMNPSLIYCEISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEAGGKLAR
ASFSPVDLGTGMHAFSGILAALLERQKTGRGMFLEVSLLDTAMGFMSYLAQNYWCSGKLPRPMGTAHPAMAPYQVFEASD
GPIMIGVGNDAQWRRFCPVAGLDDVIDAPKFATNAARVAHFDETVAMVQARIALQPVAHWIEALRKAGVACSPIHTLGDA
LAHQQVAARELIVESDHPVLGKVRNVGLPIRFGEAPRGAHRAPPLLGQHTDEVLGEAGYGPDAIADFKARGVIATANLPQ
ADSQPAAAPLTA

Sequences:

>Translated_412_residues
MIALNGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGRGDDTRAWLPQDRGQSATFLAVNHNKRSLAVDLKTAEGRQI
VQTLAAKSDVVLQGFGSGAAARLGVDYKTLSGMNPSLIYCEISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEAGGKLAR
ASFSPVDLGTGMHAFSGILAALLERQKTGRGMFLEVSLLDTAMGFMSYLAQNYWCSGKLPRPMGTAHPAMAPYQVFEASD
GPIMIGVGNDAQWRRFCPVAGLDDVIDAPKFATNAARVAHFDETVAMVQARIALQPVAHWIEALRKAGVACSPIHTLGDA
LAHQQVAARELIVESDHPVLGKVRNVGLPIRFGEAPRGAHRAPPLLGQHTDEVLGEAGYGPDAIADFKARGVIATANLPQ
ADSQPAAAPLTA
>Mature_412_residues
MIALNGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGRGDDTRAWLPQDRGQSATFLAVNHNKRSLAVDLKTAEGRQI
VQTLAAKSDVVLQGFGSGAAARLGVDYKTLSGMNPSLIYCEISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEAGGKLAR
ASFSPVDLGTGMHAFSGILAALLERQKTGRGMFLEVSLLDTAMGFMSYLAQNYWCSGKLPRPMGTAHPAMAPYQVFEASD
GPIMIGVGNDAQWRRFCPVAGLDDVIDAPKFATNAARVAHFDETVAMVQARIALQPVAHWIEALRKAGVACSPIHTLGDA
LAHQQVAARELIVESDHPVLGKVRNVGLPIRFGEAPRGAHRAPPLLGQHTDEVLGEAGYGPDAIADFKARGVIATANLPQ
ADSQPAAAPLTA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=38.0102040816327, Blast_Score=300, Evalue=2e-81,
Organism=Homo sapiens, GI300863124, Length=418, Percent_Identity=36.1244019138756, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI13376042, Length=418, Percent_Identity=33.9712918660287, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=34.4387755102041, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI266456254, Length=405, Percent_Identity=25.1851851851852, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=25, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI266458393, Length=310, Percent_Identity=27.741935483871, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI266458397, Length=254, Percent_Identity=29.9212598425197, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=34.2465753424658, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=34.2465753424658, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=349, Percent_Identity=34.3839541547278, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=29.5399515738499, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1786222, Length=397, Percent_Identity=23.9294710327456, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=348, Percent_Identity=24.1379310344828, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=343, Percent_Identity=25.3644314868805, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24648431, Length=394, Percent_Identity=38.8324873096447, Blast_Score=286, Evalue=2e-77,
Organism=Drosophila melanogaster, GI24585488, Length=408, Percent_Identity=27.2058823529412, Blast_Score=112, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43456; Mature: 43456

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALNGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGRGDDTRAWLPQDRGQSATFLA
CEEECCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
VNHNKRSLAVDLKTAEGRQIVQTLAAKSDVVLQGFGSGAAARLGVDYKTLSGMNPSLIYC
EECCCCEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHCCCCCCEEEE
EISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEAGGKLARASFSPVDLGTGMHAFSGILA
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHH
ALLERQKTGRGMFLEVSLLDTAMGFMSYLAQNYWCSGKLPRPMGTAHPAMAPYQVFEASD
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEECCC
GPIMIGVGNDAQWRRFCPVAGLDDVIDAPKFATNAARVAHFDETVAMVQARIALQPVAHW
CCEEEEECCCCCHHHCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IEALRKAGVACSPIHTLGDALAHQQVAARELIVESDHPVLGKVRNVGLPIRFGEAPRGAH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
RAPPLLGQHTDEVLGEAGYGPDAIADFKARGVIATANLPQADSQPAAAPLTA
CCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIALNGIRVLDLSKVLAGPLCGQYLGELGAEVIKVEPVGRGDDTRAWLPQDRGQSATFLA
CEEECCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
VNHNKRSLAVDLKTAEGRQIVQTLAAKSDVVLQGFGSGAAARLGVDYKTLSGMNPSLIYC
EECCCCEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHCCCCCCEEEE
EISGYGRTGPLGQEPGYDVMLQAFSGMVSTMGEAGGKLARASFSPVDLGTGMHAFSGILA
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHH
ALLERQKTGRGMFLEVSLLDTAMGFMSYLAQNYWCSGKLPRPMGTAHPAMAPYQVFEASD
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEECCC
GPIMIGVGNDAQWRRFCPVAGLDDVIDAPKFATNAARVAHFDETVAMVQARIALQPVAHW
CCEEEEECCCCCHHHCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IEALRKAGVACSPIHTLGDALAHQQVAARELIVESDHPVLGKVRNVGLPIRFGEAPRGAH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
RAPPLLGQHTDEVLGEAGYGPDAIADFKARGVIATANLPQADSQPAAAPLTA
CCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]