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The map label for this gene is tnpA [H]

Identifier: 94312296

GI number: 94312296

Start: 3640358

End: 3641884

Strand: Reverse

Name: tnpA [H]

Synonym: Rmet_3365

Alternate gene names: 94312296

Gene position: 3641884-3640358 (Counterclockwise)

Preceding gene: 94312297

Following gene: 94312295

Centisome position: 92.71

GC content: 64.51

Gene sequence:

>1527_bases
GTGATCGACGTGGCCATACTGAGCATCATTCGACGCTGGCATCTTCGCGACCAGATCCCGCTGCGCGAGATCGCCAGACG
CCTGGGTATTTCCAGGAATACGGTCAGGCGCTATCTGCGCACTGACGTCACAGCACCCGCCTACCCCACACGGCAGAGCC
CGAGCAAGCTCGACGGCCATGCCGCCAAGCTCGCCGCGTGGCTCAAGACCGAGGCCAACAAGCCGCGTAAGCAACGACGC
ACGCTCAAGCAGATCCATGCCGATCTGTGTGCTCTGGGCTTCACGGGTTCCTATGATCGAGTCGCGGCGTTCGCGCGTCG
CTGGCGTCAGGAACAGCAAGAGCAAGCGCGATCGTCGGGCCGCGGCACCTACATCCCCTTGCGCTTCGCCGAGGGTGAGG
CCTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGCCGGCGAGCGCACCAAGCTGCAGGTGGCCCAGTTCAAGCTG
AGCCACAGTCGGGCCTTCTTCCTGCGCGCCTACCTGTTGCAGACCCACGAGATGCTGTTCGATGCCCATCACCATGCCTT
TGTGGCGTGGGGCGGGATCCCGCGCCGCGGCATCTACGACAACATGAAGACGGCCGTCGACCGGGTGCGCCAGGGCAAGC
TGCGCGACGTCAACCTGCGCTTTGGCACCATGGTCAGCCATTACCTGTTCGATGCCGAGTTCTGCAATCCAGCCTCGGGC
TGGGAGAAGGGCCAGATCGAGAAGAATGTCCAGGACAGCCGTCACCGGATCTGGCAACGTGTTCCTGCCTTCGGCTCTCT
GGCCGCGCTTAATGATTGGTTGGCCGACCAATGCGTGCGCCTGTGGCAGCAGACCCGCCACCCGGAGCTGGATATGACCA
TCTGGGAAGCCTGGTCACTGGAGCGGCCGCACCTGATGCCGGTGGGGCAGGCGTTCGACGGCTTTGTCGAACACACCAAG
CGCGTGTCGCCTACCTGCCTGGTGAACTTCGAGCGCAACCGCTACAGCGTGCCTGCCTCGTTTGCCAACCGGCCCATCAG
TCTGCGTGTCTATGCCACGCGGCTCTTGTTTGTCGCCGAAGGCCAGGTGATTGCCGAGCACGTACGGCACATCAATCGCG
GTCACCATCCCGGCCATACGGTCTATGACTGGCGCCACTACCTCGCGGTGCTGCAGCGCAAGCCTGGCGCGCTGCGCAAC
GGCGCACCGTTCGCCGAGTTGCCAGAGGGCTTCCGGCGCCTGCAGGCTACGCTGCTCAAGCGGCCCGGCGGCGATCGGGA
GATGGTCGAGATCTTGGCGCTTGTCCTATTGCACGACGAACAGGCCGTGCTGACCGCGGTGGAGCTGGCGCTCGAGGCAG
GTGCCGCCTCCAAGCAGACCGTCCTCAATATCCTCAGCCGCCTGCTCGAAGGTGGACCGGTAGCCCCCATCACCACGCCT
CAGGCGCTGGCTTTGCAGGTCGAGCCGCAGGCCAACGTCGCGCGTTATGACAGTCTGCGTGACCGGGAGGTGCCGCATGC
AGCATGA

Upstream 100 bases:

>100_bases
GATTTGCACTGAATCCTGACCCACCCACGGCAGGTATTTGCATCGAATGTTGACCCACGTATAGAACACTTGCCCGCTTG
GGAACGAGCGGGAGTTCGGA

Downstream 100 bases:

>100_bases
AGCCATGATGGAGATGCTCAAATCCTTGAAGCTGCACGGCATGGCTCACGCGCTTGGCGACCTGGCGGCGCAGGACTCGC
CGGCCTATCAGTCCGCCGTC

Product: transposase catalytic site ISRme4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MIDVAILSIIRRWHLRDQIPLREIARRLGISRNTVRRYLRTDVTAPAYPTRQSPSKLDGHAAKLAAWLKTEANKPRKQRR
TLKQIHADLCALGFTGSYDRVAAFARRWRQEQQEQARSSGRGTYIPLRFAEGEAFQFDWSEDWAVIAGERTKLQVAQFKL
SHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASG
WEKGQIEKNVQDSRHRIWQRVPAFGSLAALNDWLADQCVRLWQQTRHPELDMTIWEAWSLERPHLMPVGQAFDGFVEHTK
RVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAEGQVIAEHVRHINRGHHPGHTVYDWRHYLAVLQRKPGALRN
GAPFAELPEGFRRLQATLLKRPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPITTP
QALALQVEPQANVARYDSLRDREVPHAA

Sequences:

>Translated_508_residues
MIDVAILSIIRRWHLRDQIPLREIARRLGISRNTVRRYLRTDVTAPAYPTRQSPSKLDGHAAKLAAWLKTEANKPRKQRR
TLKQIHADLCALGFTGSYDRVAAFARRWRQEQQEQARSSGRGTYIPLRFAEGEAFQFDWSEDWAVIAGERTKLQVAQFKL
SHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASG
WEKGQIEKNVQDSRHRIWQRVPAFGSLAALNDWLADQCVRLWQQTRHPELDMTIWEAWSLERPHLMPVGQAFDGFVEHTK
RVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAEGQVIAEHVRHINRGHHPGHTVYDWRHYLAVLQRKPGALRN
GAPFAELPEGFRRLQATLLKRPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPITTP
QALALQVEPQANVARYDSLRDREVPHAA
>Mature_508_residues
MIDVAILSIIRRWHLRDQIPLREIARRLGISRNTVRRYLRTDVTAPAYPTRQSPSKLDGHAAKLAAWLKTEANKPRKQRR
TLKQIHADLCALGFTGSYDRVAAFARRWRQEQQEQARSSGRGTYIPLRFAEGEAFQFDWSEDWAVIAGERTKLQVAQFKL
SHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASG
WEKGQIEKNVQDSRHRIWQRVPAFGSLAALNDWLADQCVRLWQQTRHPELDMTIWEAWSLERPHLMPVGQAFDGFVEHTK
RVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAEGQVIAEHVRHINRGHHPGHTVYDWRHYLAVLQRKPGALRN
GAPFAELPEGFRRLQATLLKRPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPITTP
QALALQVEPQANVARYDSLRDREVPHAA

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017894
- InterPro:   IPR001584 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 58107; Mature: 58107

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVAILSIIRRWHLRDQIPLREIARRLGISRNTVRRYLRTDVTAPAYPTRQSPSKLDGH
CHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
AAKLAAWLKTEANKPRKQRRTLKQIHADLCALGFTGSYDRVAAFARRWRQEQQEQARSSG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
RGTYIPLRFAEGEAFQFDWSEDWAVIAGERTKLQVAQFKLSHSRAFFLRAYLLQTHEMLF
CCCEEEEEECCCCEEEECCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASG
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
WEKGQIEKNVQDSRHRIWQRVPAFGSLAALNDWLADQCVRLWQQTRHPELDMTIWEAWSL
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCC
ERPHLMPVGQAFDGFVEHTKRVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAE
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEECCHHHCCCCEEEEEEEEEEEHEEC
GQVIAEHVRHINRGHHPGHTVYDWRHYLAVLQRKPGALRNGAPFAELPEGFRRLQATLLK
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPITTP
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
QALALQVEPQANVARYDSLRDREVPHAA
CEEEEEECCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIDVAILSIIRRWHLRDQIPLREIARRLGISRNTVRRYLRTDVTAPAYPTRQSPSKLDGH
CHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
AAKLAAWLKTEANKPRKQRRTLKQIHADLCALGFTGSYDRVAAFARRWRQEQQEQARSSG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
RGTYIPLRFAEGEAFQFDWSEDWAVIAGERTKLQVAQFKLSHSRAFFLRAYLLQTHEMLF
CCCEEEEEECCCCEEEECCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASG
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
WEKGQIEKNVQDSRHRIWQRVPAFGSLAALNDWLADQCVRLWQQTRHPELDMTIWEAWSL
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCC
ERPHLMPVGQAFDGFVEHTKRVSPTCLVNFERNRYSVPASFANRPISLRVYATRLLFVAE
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEECCHHHCCCCEEEEEEEEEEEHEEC
GQVIAEHVRHINRGHHPGHTVYDWRHYLAVLQRKPGALRNGAPFAELPEGFRRLQATLLK
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RPGGDREMVEILALVLLHDEQAVLTAVELALEAGAASKQTVLNILSRLLEGGPVAPITTP
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
QALALQVEPQANVARYDSLRDREVPHAA
CEEEEEECCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023192 [H]