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The map label for this gene is cc4 [H]

Identifier: 94312215

GI number: 94312215

Start: 3560238

End: 3560897

Strand: Reverse

Name: cc4 [H]

Synonym: Rmet_3284

Alternate gene names: 94312215

Gene position: 3560897-3560238 (Counterclockwise)

Preceding gene: 94312219

Following gene: 94312214

Centisome position: 90.65

GC content: 63.48

Gene sequence:

>660_bases
ATGAACCGCATTGCGAAACTTCTGGGTGTCATGGCGCTGGCCGTTCCGATGGCCGCCATGAGTGGGCTGGCATCTGCCGC
AGAGCAGGCCGCCGCCAAGGCAGATCCCGCCAAGGGCGAGACGCTGTATTCGCAAGGCGCACCCGATCGCAATGTGCCGG
CATGTCTTTCCTGCCACGGCGCAGCCGGCAACAGTGCCGCGGCCACCAATCCTAAGCTGGCTGGCCAGCAAGCGGAGTAC
GTGCACAAGCAACTGGCAGACTTCAAGGCCAAGAGCCGTAACAACGCCATCATGACGCCCTATGCGTCGGCGCTGAACGA
CCAGGAAATGAAGGACATCGGCGCCTATCTCGCCAAGCAGCAGGTCAAGCCTGCCACCGCGAAGAACAAGGACACGATCG
AGGTTGGCCAGAAGATCTACCGCGGTGGTATCGCGGCCAAGGGCGTGCCGGCCTGCGCTGGCTGCCACGGCCCGACCGGT
GCTGGCATCCCGGCGCAATATCCGCGAATCGGCGGCCAGTATTCCGAGTACACCGAAGCGCAACTGGTGGCGTTCCGCCA
GGGCACCCGTACCAACAATTCGGTCATGAGCACGATCGCCGCCCAGATGTCGGATACCGAGATCAAGGCGGTCGCGGACT
ACGTCGCCGGCGTCCGTTAA

Upstream 100 bases:

>100_bases
CCGGTCTCACCCCTTGCTCGAAAAGGCGCTTCCTCACCGCCTGGCAAGGGAAGATCGGCATGCATTACGGTGTTCATAAC
AAATCTGACAAGGTATACGA

Downstream 100 bases:

>100_bases
GTCGTATCCGGCCGGCATGGCAGGGTATCCCCTTGGGGGGTGAACCAGCCGTGCCAGCAGCAATCGAAGAGGGTGGCCTG
CTTGCCAAAGCACGTCCACC

Product: cytochrome c4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNRIAKLLGVMALAVPMAAMSGLASAAEQAAAKADPAKGETLYSQGAPDRNVPACLSCHGAAGNSAAATNPKLAGQQAEY
VHKQLADFKAKSRNNAIMTPYASALNDQEMKDIGAYLAKQQVKPATAKNKDTIEVGQKIYRGGIAAKGVPACAGCHGPTG
AGIPAQYPRIGGQYSEYTEAQLVAFRQGTRTNNSVMSTIAAQMSDTEIKAVADYVAGVR

Sequences:

>Translated_219_residues
MNRIAKLLGVMALAVPMAAMSGLASAAEQAAAKADPAKGETLYSQGAPDRNVPACLSCHGAAGNSAAATNPKLAGQQAEY
VHKQLADFKAKSRNNAIMTPYASALNDQEMKDIGAYLAKQQVKPATAKNKDTIEVGQKIYRGGIAAKGVPACAGCHGPTG
AGIPAQYPRIGGQYSEYTEAQLVAFRQGTRTNNSVMSTIAAQMSDTEIKAVADYVAGVR
>Mature_219_residues
MNRIAKLLGVMALAVPMAAMSGLASAAEQAAAKADPAKGETLYSQGAPDRNVPACLSCHGAAGNSAAATNPKLAGQQAEY
VHKQLADFKAKSRNNAIMTPYASALNDQEMKDIGAYLAKQQVKPATAKNKDTIEVGQKIYRGGIAAKGVPACAGCHGPTG
AGIPAQYPRIGGQYSEYTEAQLVAFRQGTRTNNSVMSTIAAQMSDTEIKAVADYVAGVR

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22688; Mature: 22688

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIAKLLGVMALAVPMAAMSGLASAAEQAAAKADPAKGETLYSQGAPDRNVPACLSCHG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHCCCC
AAGNSAAATNPKLAGQQAEYVHKQLADFKAKSRNNAIMTPYASALNDQEMKDIGAYLAKQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHCCHHHHHHHHHHHHHH
QVKPATAKNKDTIEVGQKIYRGGIAAKGVPACAGCHGPTGAGIPAQYPRIGGQYSEYTEA
HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QLVAFRQGTRTNNSVMSTIAAQMSDTEIKAVADYVAGVR
HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRIAKLLGVMALAVPMAAMSGLASAAEQAAAKADPAKGETLYSQGAPDRNVPACLSCHG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHCCCC
AAGNSAAATNPKLAGQQAEYVHKQLADFKAKSRNNAIMTPYASALNDQEMKDIGAYLAKQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHCCHHHHHHHHHHHHHH
QVKPATAKNKDTIEVGQKIYRGGIAAKGVPACAGCHGPTGAGIPAQYPRIGGQYSEYTEA
HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QLVAFRQGTRTNNSVMSTIAAQMSDTEIKAVADYVAGVR
HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]