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The map label for this gene is rpoL [C]

Identifier: 94312211

GI number: 94312211

Start: 3555208

End: 3555741

Strand: Reverse

Name: rpoL [C]

Synonym: Rmet_3280

Alternate gene names: 94312211

Gene position: 3555741-3555208 (Counterclockwise)

Preceding gene: 94312212

Following gene: 94312210

Centisome position: 90.52

GC content: 64.98

Gene sequence:

>534_bases
ATGGAACCGTTTGAACGTCAGTTGGTGGTACTGGCGCCGCGTTTGCGGCGCCATGCCCGTGGTCTGACCGGCGATGCCAT
GCTGGCCGACGATCTCGTGCAGGACACGCTTGAGCGTGCCCTGCGTTATCGCTGGAGATTTCGCCTTCGCCCCGGCGCGT
TATGGGGCGATGGCGCGGATGGGCTGCTGCCGTGGTTACTGACCCTGATGCATCGGCTGCGCCTGAATCATCTGCGCAAG
AGTGATGTCGTGACCGCAATGGATACGCTGCCGGAGGTGGTTGCCCATACCGCCGACCTCGGCCTGCGTCGCGATCTGTT
ACAGGCACTCGGCCAGTTACCGGAGCCACAGCGCGCGGTGCTGCTGCTCGTCAGCCTGGAGCAGTTCTCGTACGCCGAGG
CCGCCAGGGTGCTCGACGTGCCGATCGGCACCGTGATGTCGCGCCTGGCGCGCGCTCGCGAACATATGCGTCGCCTGCTG
GATGGCGGCGCCGATGGTGCTGCGGCAACAACTTCGTTGCAGCGGGTGAAATGA

Upstream 100 bases:

>100_bases
CCAAGGACGCCAAGGCGGGCGACAAGTCAGGCGACAACTTCAACGCCGTCTGGCACGTCGCGATGCCGTGAAGCCCTGAT
CGTCGCTAGGCAATCCCGGC

Downstream 100 bases:

>100_bases
TGGTGACCCCGACTCCAGTCGGCGAAGCCGACCTCCATGCATACGCGGACGGCCAGTTAAGCGGCCCGCGCCGGGCCGAA
GTCGAAGCCTTCCTGGCAGC

Product: RNA polymerase sigma L factor (ECF:FecI-like)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma M Factor; FecI-Like Sigma-; Extracytoplasmic Sigma Factor EcfR; RNA Polymerase Sigma-70 Factor ECF Family Protein; DNA-Directed RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MEPFERQLVVLAPRLRRHARGLTGDAMLADDLVQDTLERALRYRWRFRLRPGALWGDGADGLLPWLLTLMHRLRLNHLRK
SDVVTAMDTLPEVVAHTADLGLRRDLLQALGQLPEPQRAVLLLVSLEQFSYAEAARVLDVPIGTVMSRLARAREHMRRLL
DGGADGAAATTSLQRVK

Sequences:

>Translated_177_residues
MEPFERQLVVLAPRLRRHARGLTGDAMLADDLVQDTLERALRYRWRFRLRPGALWGDGADGLLPWLLTLMHRLRLNHLRK
SDVVTAMDTLPEVVAHTADLGLRRDLLQALGQLPEPQRAVLLLVSLEQFSYAEAARVLDVPIGTVMSRLARAREHMRRLL
DGGADGAAATTSLQRVK
>Mature_177_residues
MEPFERQLVVLAPRLRRHARGLTGDAMLADDLVQDTLERALRYRWRFRLRPGALWGDGADGLLPWLLTLMHRLRLNHLRK
SDVVTAMDTLPEVVAHTADLGLRRDLLQALGQLPEPQRAVLLLVSLEQFSYAEAARVLDVPIGTVMSRLARAREHMRRLL
DGGADGAAATTSLQRVK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19912; Mature: 19912

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPFERQLVVLAPRLRRHARGLTGDAMLADDLVQDTLERALRYRWRFRLRPGALWGDGAD
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GLLPWLLTLMHRLRLNHLRKSDVVTAMDTLPEVVAHTADLGLRRDLLQALGQLPEPQRAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LLLVSLEQFSYAEAARVLDVPIGTVMSRLARAREHMRRLLDGGADGAAATTSLQRVK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MEPFERQLVVLAPRLRRHARGLTGDAMLADDLVQDTLERALRYRWRFRLRPGALWGDGAD
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GLLPWLLTLMHRLRLNHLRKSDVVTAMDTLPEVVAHTADLGLRRDLLQALGQLPEPQRAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LLLVSLEQFSYAEAARVLDVPIGTVMSRLARAREHMRRLLDGGADGAAATTSLQRVK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA