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The map label for this gene is yedY [H]

Identifier: 94312209

GI number: 94312209

Start: 3553294

End: 3554304

Strand: Reverse

Name: yedY [H]

Synonym: Rmet_3278

Alternate gene names: 94312209

Gene position: 3554304-3553294 (Counterclockwise)

Preceding gene: 94312210

Following gene: 94312208

Centisome position: 90.48

GC content: 63.01

Gene sequence:

>1011_bases
ATGCTGATTCCCTCTCCGAAATGGCTGCGCGGCGATGACATCGCTGCCACCGAGATTACCCCGCAGCACGTATTCACGGC
GCGACGGCGCCTGCTGGCCATGGCGGCAGCGGGTACGGCCGGGGGCCTGGCAACGCCTTGGTTTGCGCGGGAGGCGTTCG
CGCAGGGCTCGCCAGGCAAGCTCCCCAAGCTGACGGCCACGCTGAACAATGCCTACGCGGTGACGGAAAAACGCACGTCG
TATGAGGACGTCACGACCTACAACAACTTTTACGAGTTCGGCACCGATAAGTCCGACCCGGCGCGATACGCCGCAACGCT
GCGGCCGCGTCCGTGGCAAGTCGCGGTGGAGGGGCTGGTCAAGCAGCCCAAGGTTTACGACCTCGACGAACTCCTGAAGC
TTGCGCCGCTTGAGGAGCGGGTGTATCGGCTCCGCTGTGTCGAAGGTTGGTCGATGGTGATCCCGTGGATTGGCTATCCG
CTTGCGGAGCTAATCCGGCGTGTCGAGCCGCAGCCGGGCGCGAAGTTCGTCCAGTTCATCACGCTGGCCGACAAGAAGCA
GATGCCCGGTATCAGCAGCGGGGTGCTGGAATGGCCCTACAGCGAGGGCTTGCGCATGGACGAGGCCATGCATCCGTTGG
CACTTCTCACATTCGGACTCTACGGCGAGGTGTTGCCGAACCAGAACGGCGCGCCGGTGCGCATGGTGGTGCCCTGGAAG
TATGGCTTCAAGAGTGCCAAGTCGATTGTGAAGATCCGCTTTGTCGACAAGCAGCCGCCGACGAGCTGGAACATCGCCGC
GGCGAACGAGTACGGCTTCTACTCGAACGTGAACCCTGACGTGGACCATCCGCGCTGGAGCCAGGCCACGGAACGGCGTA
TCGGCGAAGACAAGGGGGGAGGCGGCTTCTCGGCCCTGTTCGCGCCGAAGCGCAAGACCTTGATGTTCAACGGCTACGGT
GCGCAGGTGGCGTCGCTCTATCAGGGTATGGACCTGAGGAAGAATTTCTGA

Upstream 100 bases:

>100_bases
GCCGTCTATCAGCAATACCAACGGGGATAATCGCACTGCCGCACCTTTCAGCAGTCTTCCCTGTCAAACTCCCCAGGCTC
CATCAGGCTTCGTACGAACC

Downstream 100 bases:

>100_bases
TGGCCGAGCGCGATCTGCCGGCGTCGGCCGCGCAGGCTTCGCCGCGCCACGGTGGAGTGGCGTTGCTCGCGCCATCACGC
GTGCGCGCGGTGAAGGTCTG

Product: TMAO/DMSO reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLIPSPKWLRGDDIAATEITPQHVFTARRRLLAMAAAGTAGGLATPWFAREAFAQGSPGKLPKLTATLNNAYAVTEKRTS
YEDVTTYNNFYEFGTDKSDPARYAATLRPRPWQVAVEGLVKQPKVYDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGYP
LAELIRRVEPQPGAKFVQFITLADKKQMPGISSGVLEWPYSEGLRMDEAMHPLALLTFGLYGEVLPNQNGAPVRMVVPWK
YGFKSAKSIVKIRFVDKQPPTSWNIAAANEYGFYSNVNPDVDHPRWSQATERRIGEDKGGGGFSALFAPKRKTLMFNGYG
AQVASLYQGMDLRKNF

Sequences:

>Translated_336_residues
MLIPSPKWLRGDDIAATEITPQHVFTARRRLLAMAAAGTAGGLATPWFAREAFAQGSPGKLPKLTATLNNAYAVTEKRTS
YEDVTTYNNFYEFGTDKSDPARYAATLRPRPWQVAVEGLVKQPKVYDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGYP
LAELIRRVEPQPGAKFVQFITLADKKQMPGISSGVLEWPYSEGLRMDEAMHPLALLTFGLYGEVLPNQNGAPVRMVVPWK
YGFKSAKSIVKIRFVDKQPPTSWNIAAANEYGFYSNVNPDVDHPRWSQATERRIGEDKGGGGFSALFAPKRKTLMFNGYG
AQVASLYQGMDLRKNF
>Mature_336_residues
MLIPSPKWLRGDDIAATEITPQHVFTARRRLLAMAAAGTAGGLATPWFAREAFAQGSPGKLPKLTATLNNAYAVTEKRTS
YEDVTTYNNFYEFGTDKSDPARYAATLRPRPWQVAVEGLVKQPKVYDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGYP
LAELIRRVEPQPGAKFVQFITLADKKQMPGISSGVLEWPYSEGLRMDEAMHPLALLTFGLYGEVLPNQNGAPVRMVVPWK
YGFKSAKSIVKIRFVDKQPPTSWNIAAANEYGFYSNVNPDVDHPRWSQATERRIGEDKGGGGFSALFAPKRKTLMFNGYG
AQVASLYQGMDLRKNF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=336, Percent_Identity=49.702380952381, Blast_Score=320, Evalue=6e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 37629; Mature: 37629

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50075 ACP_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPSPKWLRGDDIAATEITPQHVFTARRRLLAMAAAGTAGGLATPWFAREAFAQGSPGK
CCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCC
LPKLTATLNNAYAVTEKRTSYEDVTTYNNFYEFGTDKSDPARYAATLRPRPWQVAVEGLV
CCEEEEECCCEEEEECCCCCCHHHHHHCCHHHCCCCCCCCHHHEEECCCCCHHHHHHHHH
KQPKVYDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGYPLAELIRRVEPQPGAKFVQFI
CCCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEHHHCCHHHHHHHHHCCCCCCHHHHHHH
TLADKKQMPGISSGVLEWPYSEGLRMDEAMHPLALLTFGLYGEVLPNQNGAPVRMVVPWK
HHHCHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCH
YGFKSAKSIVKIRFVDKQPPTSWNIAAANEYGFYSNVNPDVDHPRWSQATERRIGEDKGG
HCCHHHCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
GGFSALFAPKRKTLMFNGYGAQVASLYQGMDLRKNF
CCEEEEECCCCEEEEEECCCHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MLIPSPKWLRGDDIAATEITPQHVFTARRRLLAMAAAGTAGGLATPWFAREAFAQGSPGK
CCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCC
LPKLTATLNNAYAVTEKRTSYEDVTTYNNFYEFGTDKSDPARYAATLRPRPWQVAVEGLV
CCEEEEECCCEEEEECCCCCCHHHHHHCCHHHCCCCCCCCHHHEEECCCCCHHHHHHHHH
KQPKVYDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGYPLAELIRRVEPQPGAKFVQFI
CCCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEHHHCCHHHHHHHHHCCCCCCHHHHHHH
TLADKKQMPGISSGVLEWPYSEGLRMDEAMHPLALLTFGLYGEVLPNQNGAPVRMVVPWK
HHHCHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCH
YGFKSAKSIVKIRFVDKQPPTSWNIAAANEYGFYSNVNPDVDHPRWSQATERRIGEDKGG
HCCHHHCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
GGFSALFAPKRKTLMFNGYGAQVASLYQGMDLRKNF
CCEEEEECCCCEEEEEECCCHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]