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The map label for this gene is nirN [H]

Identifier: 94312100

GI number: 94312100

Start: 3441820

End: 3443301

Strand: Reverse

Name: nirN [H]

Synonym: Rmet_3169

Alternate gene names: 94312100

Gene position: 3443301-3441820 (Counterclockwise)

Preceding gene: 94312101

Following gene: 94312099

Centisome position: 87.66

GC content: 62.89

Gene sequence:

>1482_bases
ATGAAGCACGCGATTCTCTGGACGTGCATGTTTGCTTCATTCGTCGCCAACGCGGAGACGACAATCGATCCCGCCAGCAT
CTACAGCAGCCACTGTGCGGCTTGCCATGGTGCCGATCGTCTGGGCGGCATGGGTCCGGCGCTGTTGCCGGAAAGCCTGG
AGCGGCTGCGGCCCGACGACTTGCTCGACGTGCTGCGCAACGGTCGTCCGGCCACGCAGATGCAAGGCTTCTCCAAAGAA
CTCGGAGACGCCACGATCAAGCAGATGGCAACCTGGCTGCGCTCCGCACCCGCGGCCACGCCGCGCTGGGAGCAGGCGGA
CATCGAGGCATCGCGCATCGTCTATCACGCACCCGGCACGCTGCCGGCCCGGCCCGTTTTCAGTGCCGATCCTTCCAACC
TGTTTCTGGTCGTCGAGGCCGGGACGCATCACGTCAGCGTGCTCGACGGCGACAAACTCGAACCGATTCACCGATTCACC
ACCCGGTTCGCGCTGCACGGCGGGCCGAAGTTCAGCAGTGACGGACGCTATGTGTACATGGCGAGCCGCGATGGCTGGGT
CAGCAAGTACGACCTCTGGAACCTGAAGCTCGTGGCCGAGGTCCGCGCCGGCATGAATACCCGCAACCTTGCGGTCAGCG
AAGATGGCGAGTGGGTGATGGTCGGCAATACGTTGCCCCAGACGCTGGTGCTGCTGCGCGCTTCGGATCTGTCACTGCAG
CGTATCTATCCGGTCACGGGCGCGGGCGGGAAGTCCTCCCGCGTTTCAGCCGTTTACGACGCCGCGCCGCGTGGGTCGTT
CATCGTCGCGCTGCGCGATATTCCCGAGGTCTGGGAGATCCCATACATCGGCAAGAAGACGTTCGAACCGCGCGTGATCG
AACTCACGGACGTGCTCGACGACTTCTTCTTCGATCAGCCGTATCGCCACATTCTTGGCGCCTCGCGCACGGCCACGGGT
CAGGTGATCGATCTCGACGCAGGCCGGAAAGTGGCGGACCTCGCGCTGACCGGCATGCCGCATCTTGGCAGCGGTATTAC
GTGGAAACGCAACGGCCGCGAAGTCATGGCATCCCCGAACCTGAAGCAGGGCGCGATCAGCGTGATCGACATGCAGTCCT
GGAAGACCGTGGCGACGATCCCGACCAATGGGCCGGGCTTCTTCCTGCGTAGCCACGAAGCCACGCCATACGCATGGACC
GACGCGATGATGAGTCCGAAACGCGACACATTGCAGGTGATCGACAAGCAGACACTCGCCATCGTTGGCAATGTCACGCC
GTCTCCGGGACGCACCGCGGCGCACGTGGAGTTCACCCGTGATGGTCGATATGCGCTGGTCAGCCTGATGGAAGCCGATG
GGGCGATCGTCGTCTACGACGCCAGGACGCTGAAGGAAATCAAGCGACTGCCGATGGACAAGCCGATCGGCAAGTACAAC
GTATTCAACAAGACTACGCGCTCGTCTGGCACGAGCCATTGA

Upstream 100 bases:

>100_bases
CGCGGGCCTACGCGGTCAGCGGCAATCCGTGGGCGCAGGACCCGGGCTGCTATCTCTCAGACGCGGAGATCAGTGCGCAG
CCCAATCTGGAGACAGTGAC

Downstream 100 bases:

>100_bases
GGAGTACCAACATGCAAACGACCGGAAAGGTCTGGCTGGTTGGGGTGGGCCCGGGCGATCCGGAACTCGCCACCATGAAG
GCAGTCAGGGCGCTACGTGA

Product: NO-forming nitrite reductase

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MKHAILWTCMFASFVANAETTIDPASIYSSHCAACHGADRLGGMGPALLPESLERLRPDDLLDVLRNGRPATQMQGFSKE
LGDATIKQMATWLRSAPAATPRWEQADIEASRIVYHAPGTLPARPVFSADPSNLFLVVEAGTHHVSVLDGDKLEPIHRFT
TRFALHGGPKFSSDGRYVYMASRDGWVSKYDLWNLKLVAEVRAGMNTRNLAVSEDGEWVMVGNTLPQTLVLLRASDLSLQ
RIYPVTGAGGKSSRVSAVYDAAPRGSFIVALRDIPEVWEIPYIGKKTFEPRVIELTDVLDDFFFDQPYRHILGASRTATG
QVIDLDAGRKVADLALTGMPHLGSGITWKRNGREVMASPNLKQGAISVIDMQSWKTVATIPTNGPGFFLRSHEATPYAWT
DAMMSPKRDTLQVIDKQTLAIVGNVTPSPGRTAAHVEFTRDGRYALVSLMEADGAIVVYDARTLKEIKRLPMDKPIGKYN
VFNKTTRSSGTSH

Sequences:

>Translated_493_residues
MKHAILWTCMFASFVANAETTIDPASIYSSHCAACHGADRLGGMGPALLPESLERLRPDDLLDVLRNGRPATQMQGFSKE
LGDATIKQMATWLRSAPAATPRWEQADIEASRIVYHAPGTLPARPVFSADPSNLFLVVEAGTHHVSVLDGDKLEPIHRFT
TRFALHGGPKFSSDGRYVYMASRDGWVSKYDLWNLKLVAEVRAGMNTRNLAVSEDGEWVMVGNTLPQTLVLLRASDLSLQ
RIYPVTGAGGKSSRVSAVYDAAPRGSFIVALRDIPEVWEIPYIGKKTFEPRVIELTDVLDDFFFDQPYRHILGASRTATG
QVIDLDAGRKVADLALTGMPHLGSGITWKRNGREVMASPNLKQGAISVIDMQSWKTVATIPTNGPGFFLRSHEATPYAWT
DAMMSPKRDTLQVIDKQTLAIVGNVTPSPGRTAAHVEFTRDGRYALVSLMEADGAIVVYDARTLKEIKRLPMDKPIGKYN
VFNKTTRSSGTSH
>Mature_493_residues
MKHAILWTCMFASFVANAETTIDPASIYSSHCAACHGADRLGGMGPALLPESLERLRPDDLLDVLRNGRPATQMQGFSKE
LGDATIKQMATWLRSAPAATPRWEQADIEASRIVYHAPGTLPARPVFSADPSNLFLVVEAGTHHVSVLDGDKLEPIHRFT
TRFALHGGPKFSSDGRYVYMASRDGWVSKYDLWNLKLVAEVRAGMNTRNLAVSEDGEWVMVGNTLPQTLVLLRASDLSLQ
RIYPVTGAGGKSSRVSAVYDAAPRGSFIVALRDIPEVWEIPYIGKKTFEPRVIELTDVLDDFFFDQPYRHILGASRTATG
QVIDLDAGRKVADLALTGMPHLGSGITWKRNGREVMASPNLKQGAISVIDMQSWKTVATIPTNGPGFFLRSHEATPYAWT
DAMMSPKRDTLQVIDKQTLAIVGNVTPSPGRTAAHVEFTRDGRYALVSLMEADGAIVVYDARTLKEIKRLPMDKPIGKYN
VFNKTTRSSGTSH

Specific function: Inactivation of this cytochrome oxidase results in the loss of nitrite and nitric oxide reductase activities, but not of nitrous oxide reductase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 54137; Mature: 54137

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHAILWTCMFASFVANAETTIDPASIYSSHCAACHGADRLGGMGPALLPESLERLRPDD
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHCCCHH
LLDVLRNGRPATQMQGFSKELGDATIKQMATWLRSAPAATPRWEQADIEASRIVYHAPGT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
LPARPVFSADPSNLFLVVEAGTHHVSVLDGDKLEPIHRFTTRFALHGGPKFSSDGRYVYM
CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHEEECCCCCCCCCCCEEEE
ASRDGWVSKYDLWNLKLVAEVRAGMNTRNLAVSEDGEWVMVGNTLPQTLVLLRASDLSLQ
ECCCCCCEEECCEEEEEEEHHHCCCCCCCEEEECCCCEEEECCCCCCEEEEEEECCCCEE
RIYPVTGAGGKSSRVSAVYDAAPRGSFIVALRDIPEVWEIPYIGKKTFEPRVIELTDVLD
EEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCHHHCCCCCCCCCCCCEEEEHHHHHH
DFFFDQPYRHILGASRTATGQVIDLDAGRKVADLALTGMPHLGSGITWKRNGREVMASPN
HHHCCCCHHHHHCCCCCCCCEEEECCCCCEEEHEEEECCCCCCCCCEECCCCCEEEECCC
LKQGAISVIDMQSWKTVATIPTNGPGFFLRSHEATPYAWTDAMMSPKRDTLQVIDKQTLA
CCCCCEEEEEECCCCEEEECCCCCCCEEEECCCCCCEEEHHHHCCCCHHHHHHHCCCEEE
IVGNVTPSPGRTAAHVEFTRDGRYALVSLMEADGAIVVYDARTLKEIKRLPMDKPIGKYN
EEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCEEEEECHHHHHHHHHCCCCCCCCCCC
VFNKTTRSSGTSH
CCCCCCCCCCCCC
>Mature Secondary Structure
MKHAILWTCMFASFVANAETTIDPASIYSSHCAACHGADRLGGMGPALLPESLERLRPDD
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHCCCHH
LLDVLRNGRPATQMQGFSKELGDATIKQMATWLRSAPAATPRWEQADIEASRIVYHAPGT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
LPARPVFSADPSNLFLVVEAGTHHVSVLDGDKLEPIHRFTTRFALHGGPKFSSDGRYVYM
CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHEEECCCCCCCCCCCEEEE
ASRDGWVSKYDLWNLKLVAEVRAGMNTRNLAVSEDGEWVMVGNTLPQTLVLLRASDLSLQ
ECCCCCCEEECCEEEEEEEHHHCCCCCCCEEEECCCCEEEECCCCCCEEEEEEECCCCEE
RIYPVTGAGGKSSRVSAVYDAAPRGSFIVALRDIPEVWEIPYIGKKTFEPRVIELTDVLD
EEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCHHHCCCCCCCCCCCCEEEEHHHHHH
DFFFDQPYRHILGASRTATGQVIDLDAGRKVADLALTGMPHLGSGITWKRNGREVMASPN
HHHCCCCHHHHHCCCCCCCCEEEECCCCCEEEHEEEECCCCCCCCCEECCCCCEEEECCC
LKQGAISVIDMQSWKTVATIPTNGPGFFLRSHEATPYAWTDAMMSPKRDTLQVIDKQTLA
CCCCCEEEEEECCCCEEEECCCCCCCEEEECCCCCCEEEHHHHCCCCHHHHHHHCCCEEE
IVGNVTPSPGRTAAHVEFTRDGRYALVSLMEADGAIVVYDARTLKEIKRLPMDKPIGKYN
EEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCEEEEECHHHHHHHHHCCCCCCCCCCC
VFNKTTRSSGTSH
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]