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The map label for this gene is cspE [H]

Identifier: 94311826

GI number: 94311826

Start: 3150289

End: 3150498

Strand: Direct

Name: cspE [H]

Synonym: Rmet_2894

Alternate gene names: 94311826

Gene position: 3150289-3150498 (Clockwise)

Preceding gene: 94311821

Following gene: 94311828

Centisome position: 80.2

GC content: 53.33

Gene sequence:

>210_bases
ATGGCAAGCGGTATCGTCAAATGGTTCAATGACGCCAAGGGTTTCGGCTTTATCAAGCCGGACGACGGCGAGGAAGAACT
GTTTGCGCACTTTTCGGCAATTCAGATGTCGGGTTTCAAGACGCTGAAGGAAGGCCAGCGTGTGGTGTTCGAAATCGTGC
AAGGCCCGAAGGGCAAGCAAGCTACGAACATCCAGGACGCGAACCAGTAA

Upstream 100 bases:

>100_bases
GCCGGTGCCGCAGGGCGCCGACGCTGGAAGCCCGTCGAAGTGTTTTTCAGCTGGCCATCGGTTTCCCCGCTTGAAATCTG
CTTTTTCGTTGGGGGAGTTT

Downstream 100 bases:

>100_bases
GAGTGCGCCGCGACCGAACCGGCCGCAGAGCCGCGTCAGTCCGTCAGGATGCTGGGGGGATGTACCCCCGCGGAACGGGA
TCCAGTGCCACGGTACGGCA

Product: DNA-binding transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MASGIVKWFNDAKGFGFIKPDDGEEELFAHFSAIQMSGFKTLKEGQRVVFEIVQGPKGKQATNIQDANQ

Sequences:

>Translated_69_residues
MASGIVKWFNDAKGFGFIKPDDGEEELFAHFSAIQMSGFKTLKEGQRVVFEIVQGPKGKQATNIQDANQ
>Mature_68_residues
ASGIVKWFNDAKGFGFIKPDDGEEELFAHFSAIQMSGFKTLKEGQRVVFEIVQGPKGKQATNIQDANQ

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=65.5737704918033, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=60.9375, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=61.2903225806452, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=63.9344262295082, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=56.4516129032258, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=56.4516129032258, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=58.0645161290323, Blast_Score=77, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7634; Mature: 7503

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGIVKWFNDAKGFGFIKPDDGEEELFAHFSAIQMSGFKTLKEGQRVVFEIVQGPKGKQ
CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCC
ATNIQDANQ
CCCCCCCCC
>Mature Secondary Structure 
ASGIVKWFNDAKGFGFIKPDDGEEELFAHFSAIQMSGFKTLKEGQRVVFEIVQGPKGKQ
CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCC
ATNIQDANQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA