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The map label for this gene is 94311814

Identifier: 94311814

GI number: 94311814

Start: 3135081

End: 3135440

Strand: Reverse

Name: 94311814

Synonym: Rmet_2882

Alternate gene names: NA

Gene position: 3135440-3135081 (Counterclockwise)

Preceding gene: 94311822

Following gene: 94311813

Centisome position: 79.82

GC content: 57.5

Gene sequence:

>360_bases
TTGCGGTTCGCTTGCCGGAGCCATACCGCGCTCCGGCAGCCATACGGGCTTACCACGTTCCCTGCGCATTACACGACTGG
GTTAGGGCCTGCCTCTTCACCGGTGGTCCGAATGGCGACGTGTTCCGAACTTTCAGCGGAACAACCGACCACATACCTTT
TGGTTAGTGCCTATCAGCAGCTTTGGCACTGCAATGCTTACGGTGTTTATCAGCAGTTCACATATGTTGCCCATACCAGC
CAGCCTGGCTCCTCGACCCCATTGCTGCTAGGAGTCTCTGCGTCTCTACCTCTCGGCAGTTACGCACCCTTGCGGGGGCT
TCGTTGTCAGGAGAGCTTCACACCCCACAGTTACCCGTGA

Upstream 100 bases:

>100_bases
CCGCTTTCGCGTGAGGTAATGTCTCAACCCCTATCCGGACCATTACAGCCCGGCATTCGCTTTTTCCAACCTCCCATACC
CGCACAGCCAACAGCGTTCC

Downstream 100 bases:

>100_bases
CGCATGTCTCCCTAGGCTACTGCTAGTCGCATAGCAGGTTCTCTATCGAGGCACCCTCGCGGGTGTATTCGACCGAACCA
TAACGCGCAGAGCTAAACGC

Product: Retrotransposon protein, putative, Ty1-copia subclass from Oryza sativa (japonica cultivar-group)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MRFACRSHTALRQPYGLTTFPAHYTTGLGPASSPVVRMATCSELSAEQPTTYLLVSAYQQLWHCNAYGVYQQFTYVAHTS
QPGSSTPLLLGVSASLPLGSYAPLRGLRCQESFTPHSYP

Sequences:

>Translated_119_residues
MRFACRSHTALRQPYGLTTFPAHYTTGLGPASSPVVRMATCSELSAEQPTTYLLVSAYQQLWHCNAYGVYQQFTYVAHTS
QPGSSTPLLLGVSASLPLGSYAPLRGLRCQESFTPHSYP
>Mature_119_residues
MRFACRSHTALRQPYGLTTFPAHYTTGLGPASSPVVRMATCSELSAEQPTTYLLVSAYQQLWHCNAYGVYQQFTYVAHTS
QPGSSTPLLLGVSASLPLGSYAPLRGLRCQESFTPHSYP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13004; Mature: 13004

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFACRSHTALRQPYGLTTFPAHYTTGLGPASSPVVRMATCSELSAEQPTTYLLVSAYQQ
CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
LWHCNAYGVYQQFTYVAHTSQPGSSTPLLLGVSASLPLGSYAPLRGLRCQESFTPHSYP
HHCCCCCCHHHHEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFACRSHTALRQPYGLTTFPAHYTTGLGPASSPVVRMATCSELSAEQPTTYLLVSAYQQ
CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
LWHCNAYGVYQQFTYVAHTSQPGSSTPLLLGVSASLPLGSYAPLRGLRCQESFTPHSYP
HHCCCCCCHHHHEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA