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The map label for this gene is int [H]

Identifier: 94311779

GI number: 94311779

Start: 3095669

End: 3096769

Strand: Reverse

Name: int [H]

Synonym: Rmet_2847

Alternate gene names: 94311779

Gene position: 3096769-3095669 (Counterclockwise)

Preceding gene: 94311782

Following gene: 94311778

Centisome position: 78.84

GC content: 57.04

Gene sequence:

>1101_bases
ATGGGAAAAAGCAGGGCGATTGAAAGTGGCATCTACCAGCGTGGCCCGTACTCCTTTCAGGTCAAACTCATGGTCGATGG
CCACCGCGTCACGGGTACCTTTGACACACTGGATGAGGCCCGAGCCTATAGAAACAGTAAGCGTGCTGCCTTGGCACTCG
ATCCCGACGCGCGGCGCGTCTTGGATGCACGGGTGAAACGCCACGAGGTTAAGGCTGCCACGCTGTCGCTGGCCCTGGAT
AGATACGAGAAAGAGGTATCCGCCAAGAAGAAGTCGGCTGAGTCGGAGGCGCACAAGATCACCCGGCTCAAACGGAGCAA
GCTGGCGAAGATGAGCCTTTACAGGATTACCGCAGATGACGTTACGGCCTTTCTCAAGGATTTGAAGCGAGACCAGCCAG
GGCCATTGCAGGGCCAGCCGCTCTCTGACGCGACCAAGCGAAAGCTGGTTGCACTTCTCTCGCACGTCTTCACTATTGCT
CGCAAGCGCTGGCGAATGGCAGTTGCAAATCCTGTTGCCGACATTGAGTTGCCGTCGCACGGGAAATCTCGAAAGCGACG
TTTAGAAGAGGGGGAGGAGCAGCGTCTTCTAAGGGAACTTGCGAAGGCTCGGCAGGCGGCCATTGTTGTTCCGCTGGTTC
GGTTAGCCATCGAAACTGCGATGCGCCAAGGGGAATTGCTTGCGCTGGAATGGAAGGACCTGCGGATCGCCGACACGCAT
GGAACGGCCATGCTGCATGACACTAAAAACGGAGAGCCGAGAATTGTGCCGCTGAATGCTACCGCGTGCGAAATTCTAGG
TGCGATGCCACGCCCGCTGAAAGGAGGCCCTGTGTTCCCAATCAAAACAGCGGCGTTGCGGGCAATCTGGGAGTTCGCGT
GCGAGCGGGCTTCCATTGAAGGGCTCAGATTTCACGACTTACGGCATGAAGCAACTAGCAGGCTCTTTGAGCTGGGGCTA
GGACGTATTGAGGCAGCATCGATCACGGGGCACAAGACGCTGCAGGTTCTAAAAAATTACAGCCACCTCAGGGCTGAATG
GCTAGCTCAGAAAATGAATCAAGCGGCGAGTTCTCAGGGCCTGGCGGCGCGGCAGCTATGA

Upstream 100 bases:

>100_bases
CACGCCTTGCGGCGGGGGATTTTGAGTCCCCTGCGTTACTTCCTGCTTAACCTTTGTGTACAATGATTTACACAAATGTG
GATCGAATTTCTGGGAAAAA

Downstream 100 bases:

>100_bases
ACGCCCCTGTGCTGGTAGTGGACCTTGAGGCGACGTGCTCGGAGGACATGGCGGCAGGATGGGAGATGGAGACGGCAGAA
ATCGGTGCGGTCTGGGTCCG

Product: Tyr recombinase activity site-specific recombination Tyr recombinase activity CMGI-5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MGKSRAIESGIYQRGPYSFQVKLMVDGHRVTGTFDTLDEARAYRNSKRAALALDPDARRVLDARVKRHEVKAATLSLALD
RYEKEVSAKKKSAESEAHKITRLKRSKLAKMSLYRITADDVTAFLKDLKRDQPGPLQGQPLSDATKRKLVALLSHVFTIA
RKRWRMAVANPVADIELPSHGKSRKRRLEEGEEQRLLRELAKARQAAIVVPLVRLAIETAMRQGELLALEWKDLRIADTH
GTAMLHDTKNGEPRIVPLNATACEILGAMPRPLKGGPVFPIKTAALRAIWEFACERASIEGLRFHDLRHEATSRLFELGL
GRIEAASITGHKTLQVLKNYSHLRAEWLAQKMNQAASSQGLAARQL

Sequences:

>Translated_366_residues
MGKSRAIESGIYQRGPYSFQVKLMVDGHRVTGTFDTLDEARAYRNSKRAALALDPDARRVLDARVKRHEVKAATLSLALD
RYEKEVSAKKKSAESEAHKITRLKRSKLAKMSLYRITADDVTAFLKDLKRDQPGPLQGQPLSDATKRKLVALLSHVFTIA
RKRWRMAVANPVADIELPSHGKSRKRRLEEGEEQRLLRELAKARQAAIVVPLVRLAIETAMRQGELLALEWKDLRIADTH
GTAMLHDTKNGEPRIVPLNATACEILGAMPRPLKGGPVFPIKTAALRAIWEFACERASIEGLRFHDLRHEATSRLFELGL
GRIEAASITGHKTLQVLKNYSHLRAEWLAQKMNQAASSQGLAARQL
>Mature_365_residues
GKSRAIESGIYQRGPYSFQVKLMVDGHRVTGTFDTLDEARAYRNSKRAALALDPDARRVLDARVKRHEVKAATLSLALDR
YEKEVSAKKKSAESEAHKITRLKRSKLAKMSLYRITADDVTAFLKDLKRDQPGPLQGQPLSDATKRKLVALLSHVFTIAR
KRWRMAVANPVADIELPSHGKSRKRRLEEGEEQRLLRELAKARQAAIVVPLVRLAIETAMRQGELLALEWKDLRIADTHG
TAMLHDTKNGEPRIVPLNATACEILGAMPRPLKGGPVFPIKTAALRAIWEFACERASIEGLRFHDLRHEATSRLFELGLG
RIEAASITGHKTLQVLKNYSHLRAEWLAQKMNQAASSQGLAARQL

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40975; Mature: 40844

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKSRAIESGIYQRGPYSFQVKLMVDGHRVTGTFDTLDEARAYRNSKRAALALDPDARRV
CCCCHHHHHCCCCCCCCEEEEEEEECCCEEECCHHHHHHHHHHHCCCCEEEEECCHHHHH
LDARVKRHEVKAATLSLALDRYEKEVSAKKKSAESEAHKITRLKRSKLAKMSLYRITADD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHH
VTAFLKDLKRDQPGPLQGQPLSDATKRKLVALLSHVFTIARKRWRMAVANPVADIELPSH
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GKSRKRRLEEGEEQRLLRELAKARQAAIVVPLVRLAIETAMRQGELLALEWKDLRIADTH
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECC
GTAMLHDTKNGEPRIVPLNATACEILGAMPRPLKGGPVFPIKTAALRAIWEFACERASIE
CCEEEEECCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
GLRFHDLRHEATSRLFELGLGRIEAASITGHKTLQVLKNYSHLRAEWLAQKMNQAASSQG
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LAARQL
CHHCCC
>Mature Secondary Structure 
GKSRAIESGIYQRGPYSFQVKLMVDGHRVTGTFDTLDEARAYRNSKRAALALDPDARRV
CCCHHHHHCCCCCCCCEEEEEEEECCCEEECCHHHHHHHHHHHCCCCEEEEECCHHHHH
LDARVKRHEVKAATLSLALDRYEKEVSAKKKSAESEAHKITRLKRSKLAKMSLYRITADD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHH
VTAFLKDLKRDQPGPLQGQPLSDATKRKLVALLSHVFTIARKRWRMAVANPVADIELPSH
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GKSRKRRLEEGEEQRLLRELAKARQAAIVVPLVRLAIETAMRQGELLALEWKDLRIADTH
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECC
GTAMLHDTKNGEPRIVPLNATACEILGAMPRPLKGGPVFPIKTAALRAIWEFACERASIE
CCEEEEECCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
GLRFHDLRHEATSRLFELGLGRIEAASITGHKTLQVLKNYSHLRAEWLAQKMNQAASSQG
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LAARQL
CHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]