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The map label for this gene is rfaC [H]

Identifier: 94311647

GI number: 94311647

Start: 2948164

End: 2949255

Strand: Reverse

Name: rfaC [H]

Synonym: Rmet_2715

Alternate gene names: 94311647

Gene position: 2949255-2948164 (Counterclockwise)

Preceding gene: 94311648

Following gene: 94311646

Centisome position: 75.08

GC content: 68.41

Gene sequence:

>1092_bases
ATGCGAAGCTCCCGTTCTGACGTCGTGCAGGTATCGAACCAGGAGACACCGTCGCCGCAAGCGGCGGTGTCTCCGTTTGG
GCTGCCCGCGCGGCCTCGTATCCTGATCGTCAAGGTGTCGTCGCTGGGCGACGTGGTGCACAACATGCCGCTCGTGCACG
ATCTGCGCGCGCGCTGGCCCGATGCCGAGATCGACTGGGTGGTCGAGGAAGGTTATGTCGATCTGGTGCGGCTGCTGCCC
GATGTGGGCCGCGTGATTCCGTTCGCGCTGCGCCGCTGGCGCAAGCGCTTCTGGCGCGGCGAGACCTGGGCGGAGATTGG
CGCGCTGCGCGATGCTATCCGGGCGAGGCCCTATGACGCCGTGCTCGAGACACAGGGGCTCCTGAAGACCGCCATCGTGG
CACGCACCGCCGCGCGTGTGGCCGGGGCGCCGGTGATCGGCCTGGGCAATGCCACGCAGGGATCGGGCTACGAGCCAGCC
GCCCGGTTGTTCTACACGGCCCCTGTCAAGGTGCCGCGCCAGACTCACTCGGTGCGGCGCTCGCGTCTGCTTGGCGCCGC
GCTGACCGGCATTACCCCGCCCGAGCCGCCACGCTTCTTCGGCCCCGCGGCCAATACGTTGAGCGTCGATGATCCGTTGT
GGGCGGACCTGCCCGCACGTTACGCGGTCTGCTTCCATGCAACGGCTGGCGCGAAGAAGCGCTGGGCGGTGGAGAACTGG
CACGCGCTGGGGCGGAGGCTCGAAGCGGAGGGGCTGACTGTGCTGCTGCCGTGGGGCAGTGAGGCGGAGCGCCGCGACGC
CGAGGCGCTGGCAGCGGGTATTCCCGGCGCGCGCGTCTTGCCGCGCTTCTCGGTCATGCAGGGATTCGGGCTGATCAATC
GCGCCGAGGTGGTCATCGGCGTCGACACGGGGCTCGTGCATATCGCCGCTGCCCTGTGCCGTCCGACCGTCGAGATCTAC
ACGGCCACATGGCGCTGGAAAACTGAAGGCTACTGGTCCGACCGCATTGCCAATGTCGGTGACGATGGCATCGTGCCGAC
CGTCGACGAAGTCCATGATGCGGCGATCCGCGTGCGCGGAGTGACTGCCTGA

Upstream 100 bases:

>100_bases
ACCACGCCGGTGGTGGTGATGCGTTTCGAGGCCGACAACGATGCCGCGCTGGCCCGTATCCAGGCCGAATTCAAGCGTGT
GATTCTGGCTGAGAAACCGG

Downstream 100 bases:

>100_bases
TGCTGCGTTTCGTCTATTCGTTGCTGTGGCTGCTGATCTTGCCACTGGCGTTGCTGCGGCTGGTCTGGCGTTCGCGCAAG
GAGTCGGGCTACATCCAGCA

Product: ADP-heptose:LPS heptosyl transferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MRSSRSDVVQVSNQETPSPQAAVSPFGLPARPRILIVKVSSLGDVVHNMPLVHDLRARWPDAEIDWVVEEGYVDLVRLLP
DVGRVIPFALRRWRKRFWRGETWAEIGALRDAIRARPYDAVLETQGLLKTAIVARTAARVAGAPVIGLGNATQGSGYEPA
ARLFYTAPVKVPRQTHSVRRSRLLGAALTGITPPEPPRFFGPAANTLSVDDPLWADLPARYAVCFHATAGAKKRWAVENW
HALGRRLEAEGLTVLLPWGSEAERRDAEALAAGIPGARVLPRFSVMQGFGLINRAEVVIGVDTGLVHIAAALCRPTVEIY
TATWRWKTEGYWSDRIANVGDDGIVPTVDEVHDAAIRVRGVTA

Sequences:

>Translated_363_residues
MRSSRSDVVQVSNQETPSPQAAVSPFGLPARPRILIVKVSSLGDVVHNMPLVHDLRARWPDAEIDWVVEEGYVDLVRLLP
DVGRVIPFALRRWRKRFWRGETWAEIGALRDAIRARPYDAVLETQGLLKTAIVARTAARVAGAPVIGLGNATQGSGYEPA
ARLFYTAPVKVPRQTHSVRRSRLLGAALTGITPPEPPRFFGPAANTLSVDDPLWADLPARYAVCFHATAGAKKRWAVENW
HALGRRLEAEGLTVLLPWGSEAERRDAEALAAGIPGARVLPRFSVMQGFGLINRAEVVIGVDTGLVHIAAALCRPTVEIY
TATWRWKTEGYWSDRIANVGDDGIVPTVDEVHDAAIRVRGVTA
>Mature_363_residues
MRSSRSDVVQVSNQETPSPQAAVSPFGLPARPRILIVKVSSLGDVVHNMPLVHDLRARWPDAEIDWVVEEGYVDLVRLLP
DVGRVIPFALRRWRKRFWRGETWAEIGALRDAIRARPYDAVLETQGLLKTAIVARTAARVAGAPVIGLGNATQGSGYEPA
ARLFYTAPVKVPRQTHSVRRSRLLGAALTGITPPEPPRFFGPAANTLSVDDPLWADLPARYAVCFHATAGAKKRWAVENW
HALGRRLEAEGLTVLLPWGSEAERRDAEALAAGIPGARVLPRFSVMQGFGLINRAEVVIGVDTGLVHIAAALCRPTVEIY
TATWRWKTEGYWSDRIANVGDDGIVPTVDEVHDAAIRVRGVTA

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=294, Percent_Identity=37.7551020408163, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39736; Mature: 39736

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSRSDVVQVSNQETPSPQAAVSPFGLPARPRILIVKVSSLGDVVHNMPLVHDLRARWP
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCHHHHHHHCCC
DAEIDWVVEEGYVDLVRLLPDVGRVIPFALRRWRKRFWRGETWAEIGALRDAIRARPYDA
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
VLETQGLLKTAIVARTAARVAGAPVIGLGNATQGSGYEPAARLFYTAPVKVPRQTHSVRR
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHH
SRLLGAALTGITPPEPPRFFGPAANTLSVDDPLWADLPARYAVCFHATAGAKKRWAVENW
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
HALGRRLEAEGLTVLLPWGSEAERRDAEALAAGIPGARVLPRFSVMQGFGLINRAEVVIG
HHHHHEECCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECEEEEE
VDTGLVHIAAALCRPTVEIYTATWRWKTEGYWSDRIANVGDDGIVPTVDEVHDAAIRVRG
ECHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHCCCCCCCCCCCHHHHHCHHEEEEE
VTA
CCC
>Mature Secondary Structure
MRSSRSDVVQVSNQETPSPQAAVSPFGLPARPRILIVKVSSLGDVVHNMPLVHDLRARWP
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCHHHHHHHCCC
DAEIDWVVEEGYVDLVRLLPDVGRVIPFALRRWRKRFWRGETWAEIGALRDAIRARPYDA
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
VLETQGLLKTAIVARTAARVAGAPVIGLGNATQGSGYEPAARLFYTAPVKVPRQTHSVRR
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHH
SRLLGAALTGITPPEPPRFFGPAANTLSVDDPLWADLPARYAVCFHATAGAKKRWAVENW
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
HALGRRLEAEGLTVLLPWGSEAERRDAEALAAGIPGARVLPRFSVMQGFGLINRAEVVIG
HHHHHEECCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECEEEEE
VDTGLVHIAAALCRPTVEIYTATWRWKTEGYWSDRIANVGDDGIVPTVDEVHDAAIRVRG
ECHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHCCCCCCCCCCCHHHHHCHHEEEEE
VTA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]