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The map label for this gene is ycdC [C]

Identifier: 94311640

GI number: 94311640

Start: 2940893

End: 2941693

Strand: Direct

Name: ycdC [C]

Synonym: Rmet_2708

Alternate gene names: 94311640

Gene position: 2940893-2941693 (Clockwise)

Preceding gene: 335055625

Following gene: 94311641

Centisome position: 74.87

GC content: 66.67

Gene sequence:

>801_bases
TTGCTCCGCCCGAGGGCCCTGCCATTCCCGCACACCGTGACCGCCGCCCTGCCAAAGAAAGACCCTGATACCCGGCGCTG
GAGCCGGCGCAAGGCTGCCCGCCCCCAGGAACTGGTTGCCGCGGCGCTGGACCTCTTCGTCGAGCGCGGCTACGCGGCAA
CACGACTCGAGGATGTCGCCGCCGCCGCGGGCGTATCCAAGGGCACGGTCTATCTCTACTTCGCCAACAAGGAAGAGCTG
TTCAAGACCGTGGTCCGGGAGAACATGGTGCCGGCGCTCGTGCGCGGCACGGACTTGGTCGATCGCTACGAGGGCTCCAC
TCCCGAGTTATTGCGCGAATTGCTGCTTGGCTGGTGGGGCCTGATCGGCGCCACGCCCGTGGCCGGCCTGACCAAGCTGA
TCATGGCCGAATCGCATAATTTCCCCGATATCGCCCAGTTCTACCAGGACGAGGTCATGGGCCCCGGCGACGAACTGTTC
GCACGTGTGCTGGCCCGTGGCGTGGCGCGCGGCGAGTTCCGCGCCGCGCCGGCAAACCCTACCACCACGCTGATCTGCGC
CCCACTGGTATTCCTGATGCTCTGGCGGAGCGCCTTTGGACAACTGGACTGCCGGGTCATCGACCCTGAGGCGTTCGTCG
ACCAGTTGCTCCAGGTACTGCTGTTCGGCCTGACTACCGGGCCATCGCGCGATATGCCGCTACCGCCGGTCCAGGGCCCA
TACATATGGGAAAGGATCCGCGACGAGCTGCTGGCCGAGCGCGCGGCGGACCTGGCGCCACCTGCGGAGACAGGCCGATG
A

Upstream 100 bases:

>100_bases
CCAACAAGCTGCGCCTTGTTCATATTGTCTGCTTGACCATACGTAAGCGCCCCCCTACATTACTGACCCATAGGTTATTA
ATATCGGTCCCCGCGAGGCC

Downstream 100 bases:

>100_bases
CCGACCTTGTCGCCCGCAAGGTGACGTCTCAACACCGCCGTGGCGCAAACGCATCCCGCCGCTCGCTTCTAATGTTTTGT
AAACATGCCATTCGGGTGCG

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Regulatory Protein TetR; Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; TetR Family Transcription Regulator Protein; Transcriptional Regulator Protein; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MLRPRALPFPHTVTAALPKKDPDTRRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEEL
FKTVVRENMVPALVRGTDLVDRYEGSTPELLRELLLGWWGLIGATPVAGLTKLIMAESHNFPDIAQFYQDEVMGPGDELF
ARVLARGVARGEFRAAPANPTTTLICAPLVFLMLWRSAFGQLDCRVIDPEAFVDQLLQVLLFGLTTGPSRDMPLPPVQGP
YIWERIRDELLAERAADLAPPAETGR

Sequences:

>Translated_266_residues
MLRPRALPFPHTVTAALPKKDPDTRRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEEL
FKTVVRENMVPALVRGTDLVDRYEGSTPELLRELLLGWWGLIGATPVAGLTKLIMAESHNFPDIAQFYQDEVMGPGDELF
ARVLARGVARGEFRAAPANPTTTLICAPLVFLMLWRSAFGQLDCRVIDPEAFVDQLLQVLLFGLTTGPSRDMPLPPVQGP
YIWERIRDELLAERAADLAPPAETGR
>Mature_266_residues
MLRPRALPFPHTVTAALPKKDPDTRRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEEL
FKTVVRENMVPALVRGTDLVDRYEGSTPELLRELLLGWWGLIGATPVAGLTKLIMAESHNFPDIAQFYQDEVMGPGDELF
ARVLARGVARGEFRAAPANPTTTLICAPLVFLMLWRSAFGQLDCRVIDPEAFVDQLLQVLLFGLTTGPSRDMPLPPVQGP
YIWERIRDELLAERAADLAPPAETGR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29467; Mature: 29467

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPRALPFPHTVTAALPKKDPDTRRWSRRKAARPQELVAAALDLFVERGYAATRLEDVA
CCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
AAAGVSKGTVYLYFANKEELFKTVVRENMVPALVRGTDLVDRYEGSTPELLRELLLGWWG
HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
LIGATPVAGLTKLIMAESHNFPDIAQFYQDEVMGPGDELFARVLARGVARGEFRAAPANP
HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
TTTLICAPLVFLMLWRSAFGQLDCRVIDPEAFVDQLLQVLLFGLTTGPSRDMPLPPVQGP
CHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YIWERIRDELLAERAADLAPPAETGR
HHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLRPRALPFPHTVTAALPKKDPDTRRWSRRKAARPQELVAAALDLFVERGYAATRLEDVA
CCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
AAAGVSKGTVYLYFANKEELFKTVVRENMVPALVRGTDLVDRYEGSTPELLRELLLGWWG
HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
LIGATPVAGLTKLIMAESHNFPDIAQFYQDEVMGPGDELFARVLARGVARGEFRAAPANP
HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
TTTLICAPLVFLMLWRSAFGQLDCRVIDPEAFVDQLLQVLLFGLTTGPSRDMPLPPVQGP
CHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YIWERIRDELLAERAADLAPPAETGR
HHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA