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The map label for this gene is ygdL [H]

Identifier: 94311575

GI number: 94311575

Start: 2874776

End: 2875684

Strand: Reverse

Name: ygdL [H]

Synonym: Rmet_2639

Alternate gene names: 94311575

Gene position: 2875684-2874776 (Counterclockwise)

Preceding gene: 94311581

Following gene: 94311573

Centisome position: 73.21

GC content: 66.78

Gene sequence:

>909_bases
ATGCCGGCACGGTTCGTCGGCAGCCGGTGCCGGCAGACACAGCAACAAGAACGCATGACCCTTACCCCCACGCCTCTCGC
GGCGCAGGACTTGCCTGCGCCGTTGTCTCACGAAAGCCCCGAGGACGATGATTATCATCGCCGCTTTGGCGGCGTCGCGC
GCCTGTATGGCGCCGAAGGCCTGGCGCGGCTCGAAACGGCCAACGTCTGCGTGATCGGCATCGGCGGGGTGGGAAGCTGG
GCAGCGGAGGCATTGGCCCGAAACGCCGTGGGCCGCCTGACGCTGATCGACCTGGACCATATCGCGGCATCGAATACCAA
CCGACAGATCCATGCACTGGGCGACGCCTATGGCCGTTCCAAGGTGGACGCGATGGCCGAACGTATCGTGGCGATCAATC
CGCGCTGCCGCGTGACGGCCGTGGACGACTTCGTGACCGAGGACAACGTGCAGGCCCTGTTGTCGGGGTTTGACTACGTG
ATCGACGCTATTGACGCCGTGAAGGTCAAGACCGCGATCCTCGGGTGGGCGCGCCGTGAGGACGCTCGCGTGATCACGTG
TGGCGGGGCGGGCGGCCAGCTCGACCCGACGCGCGTGCGCATCGAGGACCTGGCCCGTACGATCCAGGACCCGCTGCTGG
CCAAGGTTCGTGGCAACCTGCGGCGCCAGTGGGGCTTTCCGCGTGATCCAAAGAAGAAGTTCGGCATCCAGGCGGTCTAC
TCGGACGAACCGCTGCGCTACCCCGAACCCGAACAGCAGGCGTGCGAGATCGACGAGGTGCCGCCCGCGCCACGCCAGGG
CCCGCAGGGGCTGGCCTGCGCGGGTTTTGGCTCCTCGGTGGCAGTGACTGCCGTGTTCGGCTTTGTGGCCGCTTCGGCTG
TGATCGGGGCAATTGCCTCAGGCGGCTAA

Upstream 100 bases:

>100_bases
CCACTATGCCTATTGTAGGGAGGCAATGCCAATGCGTTTGTCCGCCTTTGACTGACTTTCAGAATCCTGGCGCCGACCCG
GAGGCGGCGGCTGGCATAAA

Downstream 100 bases:

>100_bases
TGCCGCGAGCAGCCGATTGACGTCCGCCTCTTGGGGCGCGACGTTGTCGAAGTAGATCAATTCGGGATATTCGGCCGGCT
CGGGCAGGAAGCGGCGCGTG

Product: putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MPARFVGSRCRQTQQQERMTLTPTPLAAQDLPAPLSHESPEDDDYHRRFGGVARLYGAEGLARLETANVCVIGIGGVGSW
AAEALARNAVGRLTLIDLDHIAASNTNRQIHALGDAYGRSKVDAMAERIVAINPRCRVTAVDDFVTEDNVQALLSGFDYV
IDAIDAVKVKTAILGWARREDARVITCGGAGGQLDPTRVRIEDLARTIQDPLLAKVRGNLRRQWGFPRDPKKKFGIQAVY
SDEPLRYPEPEQQACEIDEVPPAPRQGPQGLACAGFGSSVAVTAVFGFVAASAVIGAIASGG

Sequences:

>Translated_302_residues
MPARFVGSRCRQTQQQERMTLTPTPLAAQDLPAPLSHESPEDDDYHRRFGGVARLYGAEGLARLETANVCVIGIGGVGSW
AAEALARNAVGRLTLIDLDHIAASNTNRQIHALGDAYGRSKVDAMAERIVAINPRCRVTAVDDFVTEDNVQALLSGFDYV
IDAIDAVKVKTAILGWARREDARVITCGGAGGQLDPTRVRIEDLARTIQDPLLAKVRGNLRRQWGFPRDPKKKFGIQAVY
SDEPLRYPEPEQQACEIDEVPPAPRQGPQGLACAGFGSSVAVTAVFGFVAASAVIGAIASGG
>Mature_301_residues
PARFVGSRCRQTQQQERMTLTPTPLAAQDLPAPLSHESPEDDDYHRRFGGVARLYGAEGLARLETANVCVIGIGGVGSWA
AEALARNAVGRLTLIDLDHIAASNTNRQIHALGDAYGRSKVDAMAERIVAINPRCRVTAVDDFVTEDNVQALLSGFDYVI
DAIDAVKVKTAILGWARREDARVITCGGAGGQLDPTRVRIEDLARTIQDPLLAKVRGNLRRQWGFPRDPKKKFGIQAVYS
DEPLRYPEPEQQACEIDEVPPAPRQGPQGLACAGFGSSVAVTAVFGFVAASAVIGAIASGG

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=252, Percent_Identity=52.7777777777778, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI1787048, Length=129, Percent_Identity=31.0077519379845, Blast_Score=71, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17540406, Length=118, Percent_Identity=29.6610169491525, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321790, Length=213, Percent_Identity=28.6384976525822, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322825, Length=227, Percent_Identity=25.1101321585903, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24582879, Length=118, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 32370; Mature: 32239

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARFVGSRCRQTQQQERMTLTPTPLAAQDLPAPLSHESPEDDDYHRRFGGVARLYGAEG
CCCHHHHHHHHHHHHHCCEECCCCCCCHHCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCC
LARLETANVCVIGIGGVGSWAAEALARNAVGRLTLIDLDHIAASNTNRQIHALGDAYGRS
HHHEEECCEEEEEECCCCHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCEEEECHHHHCHH
KVDAMAERIVAINPRCRVTAVDDFVTEDNVQALLSGFDYVIDAIDAVKVKTAILGWARRE
HHHHHHHHHEEECCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DARVITCGGAGGQLDPTRVRIEDLARTIQDPLLAKVRGNLRRQWGFPRDPKKKFGIQAVY
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEE
SDEPLRYPEPEQQACEIDEVPPAPRQGPQGLACAGFGSSVAVTAVFGFVAASAVIGAIAS
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
GG
CC
>Mature Secondary Structure 
PARFVGSRCRQTQQQERMTLTPTPLAAQDLPAPLSHESPEDDDYHRRFGGVARLYGAEG
CCHHHHHHHHHHHHHCCEECCCCCCCHHCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCC
LARLETANVCVIGIGGVGSWAAEALARNAVGRLTLIDLDHIAASNTNRQIHALGDAYGRS
HHHEEECCEEEEEECCCCHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCEEEECHHHHCHH
KVDAMAERIVAINPRCRVTAVDDFVTEDNVQALLSGFDYVIDAIDAVKVKTAILGWARRE
HHHHHHHHHEEECCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DARVITCGGAGGQLDPTRVRIEDLARTIQDPLLAKVRGNLRRQWGFPRDPKKKFGIQAVY
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEE
SDEPLRYPEPEQQACEIDEVPPAPRQGPQGLACAGFGSSVAVTAVFGFVAASAVIGAIAS
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
GG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]