Click here to switch to the map view.

The map label for this gene is xseB [H]

Identifier: 94311553

GI number: 94311553

Start: 2848140

End: 2848448

Strand: Reverse

Name: xseB [H]

Synonym: Rmet_2617

Alternate gene names: 94311553

Gene position: 2848448-2848140 (Counterclockwise)

Preceding gene: 94311557

Following gene: 94311552

Centisome position: 72.51

GC content: 65.7

Gene sequence:

>309_bases
ATGCCAAGAACCACGACCGCCCCGGTCCAGCCTGAAGATACGCCGGCCGCCAGCGTGCCGCCGGCTTCCTATGAGGCCGC
GATGGCCGAGCTGGAAACGCTGGTGGCGAGCATGGAAAGCGGCGATCTGCCGCTCGAGGCATCGCTTGCCGCCTACCGCC
GTGGTGCCGAGCTGGTGCGCTTTTGCCAGCAGAGCCTGGAGCGCGTGGCGCAGCAGGTCAAGGTACTCGAAGGTGACGCA
CTGAAGCCGCTAGCCGGCGAGTCGCGCACCCAGAACAACGCAGACAGCAACAGCGCAGATTTCGAATGA

Upstream 100 bases:

>100_bases
ATATCCATGTGGTCGGTGTGGCTATTGCGCCGGTCAGGCGATTCTGCGACCAAGCTCAGGATTGGCGTAAAATCCCGGAT
TCCCCTGATGAAGGCCTGAC

Downstream 100 bases:

>100_bases
GCGATTTCGCCACTTGGATGCGGGCGCAGGGCGCCCGCACCGAAGCCGCTTTGGAAGCGGCCCTACCTTCCACGGACACA
ATTCCATACACCCTCCATGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MPRTTTAPVQPEDTPAASVPPASYEAAMAELETLVASMESGDLPLEASLAAYRRGAELVRFCQQSLERVAQQVKVLEGDA
LKPLAGESRTQNNADSNSADFE

Sequences:

>Translated_102_residues
MPRTTTAPVQPEDTPAASVPPASYEAAMAELETLVASMESGDLPLEASLAAYRRGAELVRFCQQSLERVAQQVKVLEGDA
LKPLAGESRTQNNADSNSADFE
>Mature_101_residues
PRTTTAPVQPEDTPAASVPPASYEAAMAELETLVASMESGDLPLEASLAAYRRGAELVRFCQQSLERVAQQVKVLEGDAL
KPLAGESRTQNNADSNSADFE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=65, Percent_Identity=44.6153846153846, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 10865; Mature: 10734

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTTTAPVQPEDTPAASVPPASYEAAMAELETLVASMESGDLPLEASLAAYRRGAELVR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
FCQQSLERVAQQVKVLEGDALKPLAGESRTQNNADSNSADFE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRTTTAPVQPEDTPAASVPPASYEAAMAELETLVASMESGDLPLEASLAAYRRGAELVR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
FCQQSLERVAQQVKVLEGDALKPLAGESRTQNNADSNSADFE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA