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The map label for this gene is ygbK [C]

Identifier: 94311525

GI number: 94311525

Start: 2815225

End: 2816457

Strand: Direct

Name: ygbK [C]

Synonym: Rmet_2589

Alternate gene names: 94311525

Gene position: 2815225-2816457 (Clockwise)

Preceding gene: 94311524

Following gene: 94311526

Centisome position: 71.67

GC content: 69.26

Gene sequence:

>1233_bases
ATGACCTGGCTGATCATCGCCGACGACCTGTCCGGCGCCGCTGACTGCGCAATCGGCTTTGCCGCGCACGGCGCGCGCGC
GGTGGTCACACTCGACGTGGCCGATTCCGTCGGCATCGCCGATGCAGAAATCGTGGCGGCTGATGTCGATAGCCGCCGCA
TGACGCCCGAAGATGCCACCACGAGCAACATCGACGCCTGGCATCGCGGCGACGGCCGGCACCGGCGGCTGTACAAGAAA
ATCGACTCGACCCTGCGCGGTAACTGGGCCGCCGAAACGGTGGCATTGCAACCGCTGGCGGGGCTGGCGATCATCGCGCC
AGCGTTCCCCGCGACAGGGCGCACCACACGCGGCGGCCGTATGTTCGTCAACGGCCAGCCATTGGAAGACACCGACATCT
GGCGCCTGGAAGGCCTGAACGGTCACGCTGACATGGTGGCGCTGCTCGCCGCGCGCGGACTGGCCACGGCGCTACTGCCG
CTCGACGTCGTTCGGGCAGGCGCGCCGGCCGTGCTCGCCGAGTTGCGTGCGCGACAGGCGGACGGCATCGCGGCCGTTGT
CTGCGACGCCGAAACCGAACAGGATCTCGTGACCCTGGCCGACGCCTCGAATCAGCTCGACACGCCGGCGTACTGGGTCG
GCTCCGGCGGACTGGCGCGCTCGCTGTCCACCGTGGCGCAGGTCACGCGCGCGGAGACGACATCTCCGGTCACGTATCAC
CAGGGACCGGTGCTGACGATGGTCGGCAGCATGTCGGGCATTTCCGGCAAGCAAGCCGCCTACCTGTGCGAGCGGGCGCG
AATGGAAGCCCTGGTCGTGGCGCCGCAGACGCTACGCGATGGCCCGGGCCATCCTGCATGGACCACCACGCGGCAATCGA
TCACGAACTGCCTGAGCGCCGGCCGCGACCTGCTGCTCAGCATCGGCCGCGACGATGCATTCGACCCGGCCGAAGGGCCG
CGGCTGTCGACCGCGCTCGCGCAACTGGCTCTGCCCTCCTTCGAACATGTTGGCGGATTGATCGCCACCGGCGGCGAAAC
CGCGCGCGCCATGCTCGGCGCGGCCGGTATTGCGGCGCTGGCATTGCGGCACGAGGTCGAACCCGGCGTGCCGCTGTCCG
ACACCATTGAATCCCTCCCTGGCGCGCCGGCGCGCCGCGTGGCCACCAAGGCCGGTGCATTCGGCACCGAAGCTGCGTTG
TGGCTGGCGTGGCAAGCCATGCGCCAGAACTGA

Upstream 100 bases:

>100_bases
CATGTGTGGTCGTGACCGCCGTGCTGACGCCGCTGGTCACCGCATTCGTGGCACGCCGGGTAGCCAATCGCACCAGCGCG
GCCGTGGCCAGGACCACCGC

Downstream 100 bases:

>100_bases
ACCGCCCCACGAAACGGGATAAAGACAAACATGAGCGACTACATTCCTGTCATCGGCATCACGATGGGTGATGCCACGGG
CATCGGGCCCGAAGTCATCG

Product: hypothetical protein

Products: NA

Alternate protein names: 4-Hydroxythreonine-4-Phosphate Dehydrogenase; Type III Effector Hrp-Dependent Protein; Type III Effector Hrp-Dependent Outers Domain Protein; Inner Membrane Protein; YgbK Domain-Containing Protein; Pyrodoxal Phosphate Biosynthesis Protein; YgbK Domain Protein; Paral TRNA Synthase; 4-Hydroxythreonine-4-Phosphate Dehydrogenase Protein; Type III Effector Hrp-Dependent Outer Protein

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MTWLIIADDLSGAADCAIGFAAHGARAVVTLDVADSVGIADAEIVAADVDSRRMTPEDATTSNIDAWHRGDGRHRRLYKK
IDSTLRGNWAAETVALQPLAGLAIIAPAFPATGRTTRGGRMFVNGQPLEDTDIWRLEGLNGHADMVALLAARGLATALLP
LDVVRAGAPAVLAELRARQADGIAAVVCDAETEQDLVTLADASNQLDTPAYWVGSGGLARSLSTVAQVTRAETTSPVTYH
QGPVLTMVGSMSGISGKQAAYLCERARMEALVVAPQTLRDGPGHPAWTTTRQSITNCLSAGRDLLLSIGRDDAFDPAEGP
RLSTALAQLALPSFEHVGGLIATGGETARAMLGAAGIAALALRHEVEPGVPLSDTIESLPGAPARRVATKAGAFGTEAAL
WLAWQAMRQN

Sequences:

>Translated_410_residues
MTWLIIADDLSGAADCAIGFAAHGARAVVTLDVADSVGIADAEIVAADVDSRRMTPEDATTSNIDAWHRGDGRHRRLYKK
IDSTLRGNWAAETVALQPLAGLAIIAPAFPATGRTTRGGRMFVNGQPLEDTDIWRLEGLNGHADMVALLAARGLATALLP
LDVVRAGAPAVLAELRARQADGIAAVVCDAETEQDLVTLADASNQLDTPAYWVGSGGLARSLSTVAQVTRAETTSPVTYH
QGPVLTMVGSMSGISGKQAAYLCERARMEALVVAPQTLRDGPGHPAWTTTRQSITNCLSAGRDLLLSIGRDDAFDPAEGP
RLSTALAQLALPSFEHVGGLIATGGETARAMLGAAGIAALALRHEVEPGVPLSDTIESLPGAPARRVATKAGAFGTEAAL
WLAWQAMRQN
>Mature_409_residues
TWLIIADDLSGAADCAIGFAAHGARAVVTLDVADSVGIADAEIVAADVDSRRMTPEDATTSNIDAWHRGDGRHRRLYKKI
DSTLRGNWAAETVALQPLAGLAIIAPAFPATGRTTRGGRMFVNGQPLEDTDIWRLEGLNGHADMVALLAARGLATALLPL
DVVRAGAPAVLAELRARQADGIAAVVCDAETEQDLVTLADASNQLDTPAYWVGSGGLARSLSTVAQVTRAETTSPVTYHQ
GPVLTMVGSMSGISGKQAAYLCERARMEALVVAPQTLRDGPGHPAWTTTRQSITNCLSAGRDLLLSIGRDDAFDPAEGPR
LSTALAQLALPSFEHVGGLIATGGETARAMLGAAGIAALALRHEVEPGVPLSDTIESLPGAPARRVATKAGAFGTEAALW
LAWQAMRQN

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42741; Mature: 42610

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWLIIADDLSGAADCAIGFAAHGARAVVTLDVADSVGIADAEIVAADVDSRRMTPEDAT
CEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC
TSNIDAWHRGDGRHRRLYKKIDSTLRGNWAAETVALQPLAGLAIIAPAFPATGRTTRGGR
CCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHEECCCCCCEEEEECCCCCCCCCCCCCE
MFVNGQPLEDTDIWRLEGLNGHADMVALLAARGLATALLPLDVVRAGAPAVLAELRARQA
EEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
DGIAAVVCDAETEQDLVTLADASNQLDTPAYWVGSGGLARSLSTVAQVTRAETTSPVTYH
CCEEEEEECCCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEC
QGPVLTMVGSMSGISGKQAAYLCERARMEALVVAPQTLRDGPGHPAWTTTRQSITNCLSA
CCCEEEEECCCCCCCCHHHHHHHHHHHHCEEEECCHHHCCCCCCCCCCHHHHHHHHHHHC
GRDLLLSIGRDDAFDPAEGPRLSTALAQLALPSFEHVGGLIATGGETARAMLGAAGIAAL
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHHHHHHHHH
ALRHEVEPGVPLSDTIESLPGAPARRVATKAGAFGTEAALWLAWQAMRQN
HHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TWLIIADDLSGAADCAIGFAAHGARAVVTLDVADSVGIADAEIVAADVDSRRMTPEDAT
EEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC
TSNIDAWHRGDGRHRRLYKKIDSTLRGNWAAETVALQPLAGLAIIAPAFPATGRTTRGGR
CCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHEECCCCCCEEEEECCCCCCCCCCCCCE
MFVNGQPLEDTDIWRLEGLNGHADMVALLAARGLATALLPLDVVRAGAPAVLAELRARQA
EEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
DGIAAVVCDAETEQDLVTLADASNQLDTPAYWVGSGGLARSLSTVAQVTRAETTSPVTYH
CCEEEEEECCCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEC
QGPVLTMVGSMSGISGKQAAYLCERARMEALVVAPQTLRDGPGHPAWTTTRQSITNCLSA
CCCEEEEECCCCCCCCHHHHHHHHHHHHCEEEECCHHHCCCCCCCCCCHHHHHHHHHHHC
GRDLLLSIGRDDAFDPAEGPRLSTALAQLALPSFEHVGGLIATGGETARAMLGAAGIAAL
CCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHHHHHHHHH
ALRHEVEPGVPLSDTIESLPGAPARRVATKAGAFGTEAALWLAWQAMRQN
HHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA