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The map label for this gene is kdgT [H]

Identifier: 94311524

GI number: 94311524

Start: 2814245

End: 2815228

Strand: Direct

Name: kdgT [H]

Synonym: Rmet_2588

Alternate gene names: 94311524

Gene position: 2814245-2815228 (Clockwise)

Preceding gene: 94311522

Following gene: 94311525

Centisome position: 71.64

GC content: 66.06

Gene sequence:

>984_bases
ATGCAGATTCATATCAAGCGCGCCATCGAGCGCGTGCCGGGCGGCATGATGATCGTGCCGTTGCTGATCGGTTCACTGGT
TGCCACCTTCGCGCCTGACGGCCCGAAGTTCTTCGGGTCATTCACTAACGCGCTGTTCACCGGCGCTCTGCCGATCCTGG
CGGTGTTCTATGTCTGCATGGGCGCCAGCATCAACATCAAGGCCACCCCATACATCGTCAAGAAAGGCGGCGTGCTGTTC
GCCACCAAGGTAGGCACGGCGATGCTGCTGGGCGTGATCCTCGGCCACTTCCTCGGCGAGTCGCCGATCAGCGCGGGCAT
GTTCGCCGGCCTCTCCACGCTGGCCGTGGTGGCCGCGATGAACGACACCAACGGCGGCTTGTACATGGCGCTGATGGGTC
AGTACGGCCGGCCCGAGGACGTCGGCGCCTACTCGATCATGTCGCTGGAATCGGGTCCGTTCCTGACCATGGTGACGCTG
GGCGTGGCTGGTCTTTCGGCATTCCCCTGGCCGACACTGGTTGGCAGTATCCTGCCGCTGATGCTGGGCATGCTGCTCGG
TAACCTCGATCGCGAGATGCGCGACTTCCTCAGCAAGGCCGTTCCCGTGATGATTCCGTTCTTCGCGCTGGCGCTGGGCG
CGGGCCTCGATCTGCACAAGGTCTGGCAGGCCGGCATGCTCGGCCTCGGCCTGGGTGTGGCAGTGGTGGTGGTCACCGGC
TTCGCGCTGTATATCGCGGACCGCCTGAGCGGCGGCACGGGTGTGGCGGGCGTTGCGGCGGCAAGCACCGCGGGCAATGC
CGCGGCGGTACCCACGCTGGTGGCGGCAGCCAACCCCGCCTATACCGAAGCAGCCAAGAGCGCCACGATCCTGGTGGCCG
CATGTGTGGTCGTGACCGCCGTGCTGACGCCGCTGGTCACCGCATTCGTGGCACGCCGGGTAGCCAATCGCACCAGCGCG
GCCGTGGCCAGGACCACCGCATGA

Upstream 100 bases:

>100_bases
GCATTTCCCCTACACTCCGCACCTGAATTGATCGATTCAATCAATTCATTGATCAAAACACACAGGCTGCCGCGCACCCC
AGGCGCGGCTGGAGACGAAC

Downstream 100 bases:

>100_bases
CCTGGCTGATCATCGCCGACGACCTGTCCGGCGCCGCTGACTGCGCAATCGGCTTTGCCGCGCACGGCGCGCGCGCGGTG
GTCACACTCGACGTGGCCGA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MQIHIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTNALFTGALPILAVFYVCMGASINIKATPYIVKKGGVLF
ATKVGTAMLLGVILGHFLGESPISAGMFAGLSTLAVVAAMNDTNGGLYMALMGQYGRPEDVGAYSIMSLESGPFLTMVTL
GVAGLSAFPWPTLVGSILPLMLGMLLGNLDREMRDFLSKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVVVTG
FALYIADRLSGGTGVAGVAAASTAGNAAAVPTLVAAANPAYTEAAKSATILVAACVVVTAVLTPLVTAFVARRVANRTSA
AVARTTA

Sequences:

>Translated_327_residues
MQIHIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTNALFTGALPILAVFYVCMGASINIKATPYIVKKGGVLF
ATKVGTAMLLGVILGHFLGESPISAGMFAGLSTLAVVAAMNDTNGGLYMALMGQYGRPEDVGAYSIMSLESGPFLTMVTL
GVAGLSAFPWPTLVGSILPLMLGMLLGNLDREMRDFLSKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVVVTG
FALYIADRLSGGTGVAGVAAASTAGNAAAVPTLVAAANPAYTEAAKSATILVAACVVVTAVLTPLVTAFVARRVANRTSA
AVARTTA
>Mature_327_residues
MQIHIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTNALFTGALPILAVFYVCMGASINIKATPYIVKKGGVLF
ATKVGTAMLLGVILGHFLGESPISAGMFAGLSTLAVVAAMNDTNGGLYMALMGQYGRPEDVGAYSIMSLESGPFLTMVTL
GVAGLSAFPWPTLVGSILPLMLGMLLGNLDREMRDFLSKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVVVTG
FALYIADRLSGGTGVAGVAAASTAGNAAAVPTLVAAANPAYTEAAKSATILVAACVVVTAVLTPLVTAFVARRVANRTSA
AVARTTA

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=316, Percent_Identity=51.8987341772152, Blast_Score=296, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33337; Mature: 33337

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIHIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTNALFTGALPILAVFYVCM
CEEHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GASINIKATPYIVKKGGVLFATKVGTAMLLGVILGHFLGESPISAGMFAGLSTLAVVAAM
CCCCEEECCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NDTNGGLYMALMGQYGRPEDVGAYSIMSLESGPFLTMVTLGVAGLSAFPWPTLVGSILPL
CCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLGMLLGNLDREMRDFLSKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVVVTG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
FALYIADRLSGGTGVAGVAAASTAGNAAAVPTLVAAANPAYTEAAKSATILVAACVVVTA
HHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VLTPLVTAFVARRVANRTSAAVARTTA
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIHIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTNALFTGALPILAVFYVCM
CEEHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GASINIKATPYIVKKGGVLFATKVGTAMLLGVILGHFLGESPISAGMFAGLSTLAVVAAM
CCCCEEECCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NDTNGGLYMALMGQYGRPEDVGAYSIMSLESGPFLTMVTLGVAGLSAFPWPTLVGSILPL
CCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLGMLLGNLDREMRDFLSKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVVVTG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
FALYIADRLSGGTGVAGVAAASTAGNAAAVPTLVAAANPAYTEAAKSATILVAACVVVTA
HHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VLTPLVTAFVARRVANRTSAAVARTTA
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA