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The map label for this gene is yeeY [H]

Identifier: 94311516

GI number: 94311516

Start: 2804111

End: 2805139

Strand: Direct

Name: yeeY [H]

Synonym: Rmet_2580

Alternate gene names: 94311516

Gene position: 2804111-2805139 (Clockwise)

Preceding gene: 94311513

Following gene: 94311517

Centisome position: 71.39

GC content: 65.89

Gene sequence:

>1029_bases
ATGGGTCGTGGCGTTTCGATGCTAGGCAGTTTAGGGCAGCGGGAGTATATTGGCGGGCACAGCATTAGAAGCAGTCGTTC
AGAAAATCTGAATATGCCCCTATCCTTGGAATCCCTCGAAGTCCTTGACGCCATCGAGCGCAAGGGCAGCTTTGCCGCCG
CCGCCCACGAGATGGGCAAGGTGCCCTCCGCCCTGACGTATGTCGTCCGCAAGCTCGAGGAAGATCTCGACGTGCTGCTG
TTCGACCGGCGCCGCCATCGCGCCGAGCTGACACCAGCTGGCCGGGCGCTGCTTGACGAGGGCCGCCACCTGCTGCGCGC
GGCCGACGACCTGGAGCGACGCATCAAGCGGCTGGCCACCGGCTGGGAAGCCAGCCTGAACATCACCGTCGACGACCTCG
TCAATTTCCGCGCCCTGCTGCCCGTGATCCAGGATTTCTACGCCGAGAACACTGCCACGCGCCTGCGCTTTTCCAAAGAG
GTGCTGGGCGGCGCCTGGGATGCGCTGGTCAGCAATCGCGCGGACCTGATCATCGGCGGTGCCTACGAGGCGCCAAGCAC
GCAGGGCTTCCAGGTGCGTGCCCTTGGTGCCATGCCATTTGTGTTCGCGGTGGCCGCGCACCATCCGCTGGCCGCCGTCG
AAGGGCCACTCACGACGATCGAGATTGCCAAGCACCGCATCGTGGCCGTGGGCGATACGTCGCGCAACCTGCCCGCGCGC
ACCCACGGTGTGCTGGCCGGCCAGGATGTGCTGGTGGTGCCCACCATGCGCGACAAGCTCGAAGCGCAGATCCGCGGTCT
GGGCTGCGGCTGGCTGCCCGCGCCGCTGGCCCAACCGCATATCGAGAGCGGCGTGCTGCAGGCCCGGGAGACCGTGGAGG
TACGCGCCCCCGGAAACTTCAAGGTAGCCTGGCGGACGAACACACGCGGCAAGGCGCTGCAGTGGTGGACGAACAAACTC
GAGGACCCTCGGCTGGCACAGGCGCTATTGCTTCAGCCGCCGCACTCTCCGCTAGATCAGACCGACTGA

Upstream 100 bases:

>100_bases
AGCCATGGTCCGCATACCCACGTTCTTCAGATTTACGGATTTCAATCATTTTGATGGCCCTCCTTGTGGCCTGGCTATCG
ACCCAGGTGGCTAGATCCAT

Downstream 100 bases:

>100_bases
AACAGACCGACTGCCACAGAGCGACTGAATCCCGCAGTTCCATGTCACAACGCTACCGGGGCCGCTTCGCGCCCTCCCCC
ACTGGCCCGCTCCATCTGGG

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MGRGVSMLGSLGQREYIGGHSIRSSRSENLNMPLSLESLEVLDAIERKGSFAAAAHEMGKVPSALTYVVRKLEEDLDVLL
FDRRRHRAELTPAGRALLDEGRHLLRAADDLERRIKRLATGWEASLNITVDDLVNFRALLPVIQDFYAENTATRLRFSKE
VLGGAWDALVSNRADLIIGGAYEAPSTQGFQVRALGAMPFVFAVAAHHPLAAVEGPLTTIEIAKHRIVAVGDTSRNLPAR
THGVLAGQDVLVVPTMRDKLEAQIRGLGCGWLPAPLAQPHIESGVLQARETVEVRAPGNFKVAWRTNTRGKALQWWTNKL
EDPRLAQALLLQPPHSPLDQTD

Sequences:

>Translated_342_residues
MGRGVSMLGSLGQREYIGGHSIRSSRSENLNMPLSLESLEVLDAIERKGSFAAAAHEMGKVPSALTYVVRKLEEDLDVLL
FDRRRHRAELTPAGRALLDEGRHLLRAADDLERRIKRLATGWEASLNITVDDLVNFRALLPVIQDFYAENTATRLRFSKE
VLGGAWDALVSNRADLIIGGAYEAPSTQGFQVRALGAMPFVFAVAAHHPLAAVEGPLTTIEIAKHRIVAVGDTSRNLPAR
THGVLAGQDVLVVPTMRDKLEAQIRGLGCGWLPAPLAQPHIESGVLQARETVEVRAPGNFKVAWRTNTRGKALQWWTNKL
EDPRLAQALLLQPPHSPLDQTD
>Mature_341_residues
GRGVSMLGSLGQREYIGGHSIRSSRSENLNMPLSLESLEVLDAIERKGSFAAAAHEMGKVPSALTYVVRKLEEDLDVLLF
DRRRHRAELTPAGRALLDEGRHLLRAADDLERRIKRLATGWEASLNITVDDLVNFRALLPVIQDFYAENTATRLRFSKEV
LGGAWDALVSNRADLIIGGAYEAPSTQGFQVRALGAMPFVFAVAAHHPLAAVEGPLTTIEIAKHRIVAVGDTSRNLPART
HGVLAGQDVLVVPTMRDKLEAQIRGLGCGWLPAPLAQPHIESGVLQARETVEVRAPGNFKVAWRTNTRGKALQWWTNKLE
DPRLAQALLLQPPHSPLDQTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=285, Percent_Identity=43.5087719298246, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1789492, Length=295, Percent_Identity=41.0169491525424, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI1787949, Length=301, Percent_Identity=35.5481727574751, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1786713, Length=279, Percent_Identity=31.1827956989247, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1786508, Length=287, Percent_Identity=28.5714285714286, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37532; Mature: 37401

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRGVSMLGSLGQREYIGGHSIRSSRSENLNMPLSLESLEVLDAIERKGSFAAAAHEMGK
CCCCHHHHHCCCCHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCC
VPSALTYVVRKLEEDLDVLLFDRRRHRAELTPAGRALLDEGRHLLRAADDLERRIKRLAT
CHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWEASLNITVDDLVNFRALLPVIQDFYAENTATRLRFSKEVLGGAWDALVSNRADLIIGG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
AYEAPSTQGFQVRALGAMPFVFAVAAHHPLAAVEGPLTTIEIAKHRIVAVGDTSRNLPAR
CCCCCCCCCEEEEEECCHHHHHHHHHCCCHHHHCCCCCEEEECCCEEEEECCCCCCCCCH
THGVLAGQDVLVVPTMRDKLEAQIRGLGCGWLPAPLAQPHIESGVLQARETVEVRAPGNF
HCCEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCCCE
KVAWRTNTRGKALQWWTNKLEDPRLAQALLLQPPHSPLDQTD
EEEEECCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GRGVSMLGSLGQREYIGGHSIRSSRSENLNMPLSLESLEVLDAIERKGSFAAAAHEMGK
CCCHHHHHCCCCHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCC
VPSALTYVVRKLEEDLDVLLFDRRRHRAELTPAGRALLDEGRHLLRAADDLERRIKRLAT
CHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWEASLNITVDDLVNFRALLPVIQDFYAENTATRLRFSKEVLGGAWDALVSNRADLIIGG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
AYEAPSTQGFQVRALGAMPFVFAVAAHHPLAAVEGPLTTIEIAKHRIVAVGDTSRNLPAR
CCCCCCCCCEEEEEECCHHHHHHHHHCCCHHHHCCCCCEEEECCCEEEEECCCCCCCCCH
THGVLAGQDVLVVPTMRDKLEAQIRGLGCGWLPAPLAQPHIESGVLQARETVEVRAPGNF
HCCEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCCCE
KVAWRTNTRGKALQWWTNKLEDPRLAQALLLQPPHSPLDQTD
EEEEECCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]