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The map label for this gene is recO

Identifier: 94311352

GI number: 94311352

Start: 2625759

End: 2626655

Strand: Reverse

Name: recO

Synonym: Rmet_2416

Alternate gene names: 94311352

Gene position: 2626655-2625759 (Counterclockwise)

Preceding gene: 94311353

Following gene: 94311351

Centisome position: 66.87

GC content: 65.11

Gene sequence:

>897_bases
ATGCCTGACGTGCGCCGCGCTGCCGCGCCGCGTGCGCGCAGTGCCGACCCGATTGCCGAGGAAGCGGCGGAGCTGCTGGG
GTCTGGCGCGGTACCTGCCATGAACGCGGCGGTCAGCCCCTCGGTGGCGGCCGGCCGCGAAATGATGGATCGCGCGATGC
GTATCGTTCCGGCTCGCTCGGAACTGCGCGTCACCAATGAGGCGGGCTTCGTGCTTCATGCGCATCCTTATCGCGAAACC
AGTCTGGTTCTCGATGTCTTCACTCGCGATCACGGTCGCGTGGCCATGGTCGCGAAAGGGGCCAAGCGGCCGCATTCCGC
ACTGCGCGCGGTGCTGCAGCATTTTCATCCGATCGCCCTGTCCTGGACCGGCCGCGGCGAGGTCAAGACGCTGACCAAGG
CGGAGTACGTGGGCGGCATGCTGCCGCTTTCCGGCGACGCGCTGCTTTCCGGCTTCTACCTGAACGAACTGCTGCTGCGC
TTCTGTCCGCGCGAGGACGCGCATCCGACCCTGTTCCGCCACTACATGGCGACGCTGACGCGGCTGTCACATGGCGAGCC
GGCCAGCTTCGTATTGCGCAGCTTCGAGCGGGTGCTGCTGCAGGAGACGGGGTTTGCGGTAGCGTTCGATCAGTGCCTCA
GATCGGGCGAACGCGTGCAGCCGGGGCTCGATTACGTCTACCAGCCTGAGCGCGGGGTGCGGCGCACGCATGCGTCAGAT
CCGTCGAGCTGGCCCGTGGTGTCGGGACAGACGCTGCTGGATATGGCGCAGGATGATTATTCGCGTGCGCAGACCGTTTC
GCAAAGCCGCGCACTGATGCGGTTCCTGCTGCATTATTATTTGCAGGGTGCGCCACTGAAGACGCGCCAGATCCTGATCG
ATCTGCAGTACCTTTAA

Upstream 100 bases:

>100_bases
TGTTTGATGGCAAGGTCTACCTGGAGATGTGGATCAAGGTCAAGAGCGGCTGGGCCGATAACGAAGCCGGACTGCGCGCC
TACGGCTACGAGTGAGCAAG

Downstream 100 bases:

>100_bases
TATCCCAATTCTCCTGAGAGAAGCCGGCATGATTTTCCACGCGAACCCCGGTGTCATAGACCTCGGGGTCAATATCGACC
ACGTGGCCACGCTGCGCAAC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MPDVRRAAAPRARSADPIAEEAAELLGSGAVPAMNAAVSPSVAAGREMMDRAMRIVPARSELRVTNEAGFVLHAHPYRET
SLVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIALSWTGRGEVKTLTKAEYVGGMLPLSGDALLSGFYLNELLLR
FCPREDAHPTLFRHYMATLTRLSHGEPASFVLRSFERVLLQETGFAVAFDQCLRSGERVQPGLDYVYQPERGVRRTHASD
PSSWPVVSGQTLLDMAQDDYSRAQTVSQSRALMRFLLHYYLQGAPLKTRQILIDLQYL

Sequences:

>Translated_298_residues
MPDVRRAAAPRARSADPIAEEAAELLGSGAVPAMNAAVSPSVAAGREMMDRAMRIVPARSELRVTNEAGFVLHAHPYRET
SLVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIALSWTGRGEVKTLTKAEYVGGMLPLSGDALLSGFYLNELLLR
FCPREDAHPTLFRHYMATLTRLSHGEPASFVLRSFERVLLQETGFAVAFDQCLRSGERVQPGLDYVYQPERGVRRTHASD
PSSWPVVSGQTLLDMAQDDYSRAQTVSQSRALMRFLLHYYLQGAPLKTRQILIDLQYL
>Mature_297_residues
PDVRRAAAPRARSADPIAEEAAELLGSGAVPAMNAAVSPSVAAGREMMDRAMRIVPARSELRVTNEAGFVLHAHPYRETS
LVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIALSWTGRGEVKTLTKAEYVGGMLPLSGDALLSGFYLNELLLRF
CPREDAHPTLFRHYMATLTRLSHGEPASFVLRSFERVLLQETGFAVAFDQCLRSGERVQPGLDYVYQPERGVRRTHASDP
SSWPVVSGQTLLDMAQDDYSRAQTVSQSRALMRFLLHYYLQGAPLKTRQILIDLQYL

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=225, Percent_Identity=41.3333333333333, Blast_Score=151, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_RALME (Q1LKN3)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_584562.1
- ProteinModelPortal:   Q1LKN3
- STRING:   Q1LKN3
- GeneID:   4039238
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_2416
- eggNOG:   COG1381
- HOGENOM:   HBG645116
- OMA:   SILQPFQ
- PhylomeDB:   Q1LKN3
- ProtClustDB:   PRK00085
- BioCyc:   RMET266264:RMET_2416-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 33106; Mature: 32975

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVRRAAAPRARSADPIAEEAAELLGSGAVPAMNAAVSPSVAAGREMMDRAMRIVPARS
CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCH
ELRVTNEAGFVLHAHPYRETSLVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIAL
HEEEECCCCEEEEECCCCCHHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
SWTGRGEVKTLTKAEYVGGMLPLSGDALLSGFYLNELLLRFCPREDAHPTLFRHYMATLT
EECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
RLSHGEPASFVLRSFERVLLQETGFAVAFDQCLRSGERVQPGLDYVYQPERGVRRTHASD
HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCCC
PSSWPVVSGQTLLDMAQDDYSRAQTVSQSRALMRFLLHYYLQGAPLKTRQILIDLQYL
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
PDVRRAAAPRARSADPIAEEAAELLGSGAVPAMNAAVSPSVAAGREMMDRAMRIVPARS
CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCH
ELRVTNEAGFVLHAHPYRETSLVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIAL
HEEEECCCCEEEEECCCCCHHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
SWTGRGEVKTLTKAEYVGGMLPLSGDALLSGFYLNELLLRFCPREDAHPTLFRHYMATLT
EECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
RLSHGEPASFVLRSFERVLLQETGFAVAFDQCLRSGERVQPGLDYVYQPERGVRRTHASD
HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCCC
PSSWPVVSGQTLLDMAQDDYSRAQTVSQSRALMRFLLHYYLQGAPLKTRQILIDLQYL
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA