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The map label for this gene is int [C]

Identifier: 94311110

GI number: 94311110

Start: 2376377

End: 2377771

Strand: Reverse

Name: int [C]

Synonym: Rmet_2172

Alternate gene names: 94311110

Gene position: 2377771-2376377 (Counterclockwise)

Preceding gene: 94311111

Following gene: 94311109

Centisome position: 60.53

GC content: 57.2

Gene sequence:

>1395_bases
ATGTACAAGCACGTGAGCCTGCGCAGGCGGCAGTTGAGCGGAAGAACCTCCTGGCTGCTGCTCGGGCCAGACGGTCGCCC
CATCGATGCGTTCACCGCGTTCGCCGAGTCACTGCGCAACGCGCCGGCGAACACGCGCGACTCATACTGTCGCCACCTCG
CCGAGTTCTTCGACTACCTCATCGAGGCCGCTGCACTCATCGGTCAAGGGCGGCAGCTTACCAAGTTGGAGCTGACCGAG
ACTCTGGAAGCCTACGGGGACTACCTGCTTCTCGGGATAGACGCTTCTCGACCCATCGCACAAGCGGTTGCTTCATCGTT
GCCGCCTGGTGTAAACCAGGCGAGTAGCGTGGTGCCGAAGAAGGCGGCTCTTCGACGCTTTCTGAAGCTGTCTGAGGATG
TCAGGAAGGAGATGGCAGAGCTGGCACGCCTATACGACAGCCGAGGCGTAATTGCGGATACTCCGCTCCTTCCCGAACTA
GGACAAAAGCGTCCACTGCAACTGGGTGAGGTCAGGGCGATGCAAGCCCACTCAATGATTGCAGGTGTTGTCGCCGGCGG
CCCAAAATTTGTCGAATGTGTTGTTCTCGGTGACGGGGCGGCAGATGCGCCGTACGACGAGCAACGGGCCTTTCCGTATG
ACAAGGTCATGGACCTTATCGACGCGATGCCCACATACCGTGACAAGGCCTTCTATGCACTGCTTGCTGCAAGCGGGTGT
CGTACACATGAAGCGCTGCAGGTTTTGCTAAATGACGACATCGACGTGGATGAAGGAACGGTCCGTCTCGTTGACCCTAA
AAGCAGGTCCGGGCATTCGAGTTACCGCTCTCTCACGCCCTCCCAGCGAGAACTGCTTGCGTGGAAGGGGAGAACGTCGG
ACCTAACCCTCCTCATCGAGCCCTTTGCGACATCGTTCTTCGACTCGCTTCAAGGGTATCTGGAGCAAGAGCATCTCGCA
CATGGCAAGCATGGTTTCCTCTTCCAGTATCTAAAGGGCCTTGAGCGTGGCCAGCCATACTTCCTGAGTGCTCCTGGGAC
CCGATTGGAGTTGTTCCACCGGGTGCAGAAGCACATTGGCGTGATGCTTCCACCTGGTACCGGCCCGCACTCGCTCAGAC
ATATGTATGGGACTTATGTGCTGAACTACTTTCCCCGTGCCAATGGCGACTATGGGTTACCCGTACCGATGGTGCAGCAA
CTTCTCGGGCACGCTGACATCAATAGCACGCTGAAGTACGCAAAGTTCGACAAGGACCTTTTCAAGCTCGAAGTTCAAAA
TGCTAATCGGGTCCTCTTCAGCCATGGCACGCCGAAAAAGCTTATGGAGCTTAAGCTCGAAGCGCTTCGCGCACAAATGG
CTAAAGTGCAGTCGCAGCTCTCACAGAGACCCTGA

Upstream 100 bases:

>100_bases
GGGTCCGGGGCTTGGCGCTGCGCGTCATTGCACGTCGGAAAGCTTCGTGCGTACTAGTCACTGATGCTAAGCTGGCCCCA
GTTGCATACTTGGGGGCGGT

Downstream 100 bases:

>100_bases
CGCATGGTTAACCTGACCCCGGATAGCATCGTATTCAACCGAATCGATGAAGCCCTTAACGCTGACATCCGCGCCGCGCT
CCAGCTTGCTGCCGACACAT

Product: Tyr recombinase activity site-specific recombination Tyr recombinase activity

Products: NA

Alternate protein names: Phage Integrase; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MYKHVSLRRRQLSGRTSWLLLGPDGRPIDAFTAFAESLRNAPANTRDSYCRHLAEFFDYLIEAAALIGQGRQLTKLELTE
TLEAYGDYLLLGIDASRPIAQAVASSLPPGVNQASSVVPKKAALRRFLKLSEDVRKEMAELARLYDSRGVIADTPLLPEL
GQKRPLQLGEVRAMQAHSMIAGVVAGGPKFVECVVLGDGAADAPYDEQRAFPYDKVMDLIDAMPTYRDKAFYALLAASGC
RTHEALQVLLNDDIDVDEGTVRLVDPKSRSGHSSYRSLTPSQRELLAWKGRTSDLTLLIEPFATSFFDSLQGYLEQEHLA
HGKHGFLFQYLKGLERGQPYFLSAPGTRLELFHRVQKHIGVMLPPGTGPHSLRHMYGTYVLNYFPRANGDYGLPVPMVQQ
LLGHADINSTLKYAKFDKDLFKLEVQNANRVLFSHGTPKKLMELKLEALRAQMAKVQSQLSQRP

Sequences:

>Translated_464_residues
MYKHVSLRRRQLSGRTSWLLLGPDGRPIDAFTAFAESLRNAPANTRDSYCRHLAEFFDYLIEAAALIGQGRQLTKLELTE
TLEAYGDYLLLGIDASRPIAQAVASSLPPGVNQASSVVPKKAALRRFLKLSEDVRKEMAELARLYDSRGVIADTPLLPEL
GQKRPLQLGEVRAMQAHSMIAGVVAGGPKFVECVVLGDGAADAPYDEQRAFPYDKVMDLIDAMPTYRDKAFYALLAASGC
RTHEALQVLLNDDIDVDEGTVRLVDPKSRSGHSSYRSLTPSQRELLAWKGRTSDLTLLIEPFATSFFDSLQGYLEQEHLA
HGKHGFLFQYLKGLERGQPYFLSAPGTRLELFHRVQKHIGVMLPPGTGPHSLRHMYGTYVLNYFPRANGDYGLPVPMVQQ
LLGHADINSTLKYAKFDKDLFKLEVQNANRVLFSHGTPKKLMELKLEALRAQMAKVQSQLSQRP
>Mature_464_residues
MYKHVSLRRRQLSGRTSWLLLGPDGRPIDAFTAFAESLRNAPANTRDSYCRHLAEFFDYLIEAAALIGQGRQLTKLELTE
TLEAYGDYLLLGIDASRPIAQAVASSLPPGVNQASSVVPKKAALRRFLKLSEDVRKEMAELARLYDSRGVIADTPLLPEL
GQKRPLQLGEVRAMQAHSMIAGVVAGGPKFVECVVLGDGAADAPYDEQRAFPYDKVMDLIDAMPTYRDKAFYALLAASGC
RTHEALQVLLNDDIDVDEGTVRLVDPKSRSGHSSYRSLTPSQRELLAWKGRTSDLTLLIEPFATSFFDSLQGYLEQEHLA
HGKHGFLFQYLKGLERGQPYFLSAPGTRLELFHRVQKHIGVMLPPGTGPHSLRHMYGTYVLNYFPRANGDYGLPVPMVQQ
LLGHADINSTLKYAKFDKDLFKLEVQNANRVLFSHGTPKKLMELKLEALRAQMAKVQSQLSQRP

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51740; Mature: 51740

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKHVSLRRRQLSGRTSWLLLGPDGRPIDAFTAFAESLRNAPANTRDSYCRHLAEFFDYL
CCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
IEAAALIGQGRQLTKLELTETLEAYGDYLLLGIDASRPIAQAVASSLPPGVNQASSVVPK
HHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHCCH
KAALRRFLKLSEDVRKEMAELARLYDSRGVIADTPLLPELGQKRPLQLGEVRAMQAHSMI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHCCCCCCCHHHHHHHHHHHHH
AGVVAGGPKFVECVVLGDGAADAPYDEQRAFPYDKVMDLIDAMPTYRDKAFYALLAASGC
HHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC
RTHEALQVLLNDDIDVDEGTVRLVDPKSRSGHSSYRSLTPSQRELLAWKGRTSDLTLLIE
CHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCHHHHHHCCCCCCCEEEEEH
PFATSFFDSLQGYLEQEHLAHGKHGFLFQYLKGLERGQPYFLSAPGTRLELFHRVQKHIG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCC
VMLPPGTGPHSLRHMYGTYVLNYFPRANGDYGLPVPMVQQLLGHADINSTLKYAKFDKDL
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHH
FKLEVQNANRVLFSHGTPKKLMELKLEALRAQMAKVQSQLSQRP
HEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYKHVSLRRRQLSGRTSWLLLGPDGRPIDAFTAFAESLRNAPANTRDSYCRHLAEFFDYL
CCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
IEAAALIGQGRQLTKLELTETLEAYGDYLLLGIDASRPIAQAVASSLPPGVNQASSVVPK
HHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHCCH
KAALRRFLKLSEDVRKEMAELARLYDSRGVIADTPLLPELGQKRPLQLGEVRAMQAHSMI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHCCCCCCCHHHHHHHHHHHHH
AGVVAGGPKFVECVVLGDGAADAPYDEQRAFPYDKVMDLIDAMPTYRDKAFYALLAASGC
HHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC
RTHEALQVLLNDDIDVDEGTVRLVDPKSRSGHSSYRSLTPSQRELLAWKGRTSDLTLLIE
CHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCHHHHHHCCCCCCCEEEEEH
PFATSFFDSLQGYLEQEHLAHGKHGFLFQYLKGLERGQPYFLSAPGTRLELFHRVQKHIG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCC
VMLPPGTGPHSLRHMYGTYVLNYFPRANGDYGLPVPMVQQLLGHADINSTLKYAKFDKDL
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHH
FKLEVQNANRVLFSHGTPKKLMELKLEALRAQMAKVQSQLSQRP
HEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA