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The map label for this gene is rbcR [H]

Identifier: 94311064

GI number: 94311064

Start: 2308116

End: 2309021

Strand: Reverse

Name: rbcR [H]

Synonym: Rmet_2126

Alternate gene names: 94311064

Gene position: 2309021-2308116 (Counterclockwise)

Preceding gene: 94311065

Following gene: 94311063

Centisome position: 58.78

GC content: 66.45

Gene sequence:

>906_bases
ATGAATCTGGCGCGCTTCGATCTCGTCACGCTGGGGCTGTTTGTGGCCGTGGCACGGCAGGGCAGTATCTCGGCCGGCGC
GCGGCAATCGCATCTGGCCGTGGCGGCTGCCAGCAAGCGAATCTCCGACCTGGAGACCGCGGTCGGGGCGCCGCTGTTTT
TCCGCCATGCCGCTGGCGTGCAGCTTACCGAGGCGGGGCAGGCCTGCTTCCACCACGCGCTGACCATCCTGCAGGACGTG
GAGCGCATGGCCGGGGTGATGTCCGACTACGCCTCGGGTGTGCGCGGGCAGGTGCGAGTCTGTGCCAATACCTCGGCCAT
CACGCAGTTTCTTCCCGATGATCTGGCGCAGTTCATGCGCCAGCATCCCACCATCCGCATCGAACTCGAAGAACACAATA
GCAGCGACATCGTTGCCGCTGTCATGGAAAACCGGGCCGATGTGGGCATCTTCGCCGACCGCACGCCGTGCGCGGGACTG
GTGACGCTCGAGTATCGGCAGGACGAACTCGTCATCATCACGCCGCCGGGGCATCCACTGGCGCAAAACGGTCCGGTCCA
CTATGCCGATGCGCTCGAATACGACTTCGTCAGCTTGCCGCAGGTGACCTCGCTGGCGGCGCGGCTGTTGGAAGAAAGTA
GTCGGCTCGAGCGGCAGTTTCGGCTGCGCATCCAGGTGCGGAGCTTCGACGCGATGTGTCGCATGGTCATGGCCGGTCTG
GGCGTGGGGGTGCTGCCGCGGATCGCCGCGGAGCCGCACGTCAAGTCGATGGGGCTCTCGCTGGTCGGTCTGCGGGACGC
CTGGGCGCGCCGATCGCTGCTGATCGGCATGCGAGACCCGGCCGGGCTCACGGTCTCGGCGCGGCTGTTGATCAGCCATC
TCTGCGGCGACCGCGCGCCATTCTGA

Upstream 100 bases:

>100_bases
GCGTCTGGCGCGAGGCGTGCCGGTGGGTGGCGAACTGGAATACGTGGATGCGGGCACCATCGCCCGCGCCGTGATGGACC
GTCGCACCCTGTAACGGACC

Downstream 100 bases:

>100_bases
GTCCCCGAGCCCGCTTCTGAACCCTCTAGGGTTCTCCCTGATCTTTCGCATTCCGAGAAAGCCCGCTTTCCGGAATGCCG
ATTCCGCATCACCCCGCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNLARFDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGVQLTEAGQACFHHALTILQDV
ERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAQFMRQHPTIRIELEEHNSSDIVAAVMENRADVGIFADRTPCAGL
VTLEYRQDELVIITPPGHPLAQNGPVHYADALEYDFVSLPQVTSLAARLLEESSRLERQFRLRIQVRSFDAMCRMVMAGL
GVGVLPRIAAEPHVKSMGLSLVGLRDAWARRSLLIGMRDPAGLTVSARLLISHLCGDRAPF

Sequences:

>Translated_301_residues
MNLARFDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGVQLTEAGQACFHHALTILQDV
ERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAQFMRQHPTIRIELEEHNSSDIVAAVMENRADVGIFADRTPCAGL
VTLEYRQDELVIITPPGHPLAQNGPVHYADALEYDFVSLPQVTSLAARLLEESSRLERQFRLRIQVRSFDAMCRMVMAGL
GVGVLPRIAAEPHVKSMGLSLVGLRDAWARRSLLIGMRDPAGLTVSARLLISHLCGDRAPF
>Mature_301_residues
MNLARFDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGVQLTEAGQACFHHALTILQDV
ERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAQFMRQHPTIRIELEEHNSSDIVAAVMENRADVGIFADRTPCAGL
VTLEYRQDELVIITPPGHPLAQNGPVHYADALEYDFVSLPQVTSLAARLLEESSRLERQFRLRIQVRSFDAMCRMVMAGL
GVGVLPRIAAEPHVKSMGLSLVGLRDAWARRSLLIGMRDPAGLTVSARLLISHLCGDRAPF

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=24.6666666666667, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=30.9941520467836, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788481, Length=268, Percent_Identity=25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=171, Percent_Identity=28.0701754385965, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=203, Percent_Identity=31.5270935960591, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790208, Length=255, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788887, Length=239, Percent_Identity=27.1966527196653, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788297, Length=284, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786508, Length=237, Percent_Identity=25.7383966244726, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=242, Percent_Identity=24.7933884297521, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=22.5806451612903, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789440, Length=120, Percent_Identity=30, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=259, Percent_Identity=23.1660231660232, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786401, Length=142, Percent_Identity=29.5774647887324, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=201, Percent_Identity=23.3830845771144, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32690; Mature: 32690

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLARFDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGV
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
QLTEAGQACFHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAQFMR
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHH
QHPTIRIELEEHNSSDIVAAVMENRADVGIFADRTPCAGLVTLEYRQDELVIITPPGHPL
HCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCCCCC
AQNGPVHYADALEYDFVSLPQVTSLAARLLEESSRLERQFRLRIQVRSFDAMCRMVMAGL
CCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHC
GVGVLPRIAAEPHVKSMGLSLVGLRDAWARRSLLIGMRDPAGLTVSARLLISHLCGDRAP
CCCHHHHHCCCCCHHHCCCEEEEHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCCC
F
C
>Mature Secondary Structure
MNLARFDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGV
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
QLTEAGQACFHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAQFMR
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHH
QHPTIRIELEEHNSSDIVAAVMENRADVGIFADRTPCAGLVTLEYRQDELVIITPPGHPL
HCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCCCCC
AQNGPVHYADALEYDFVSLPQVTSLAARLLEESSRLERQFRLRIQVRSFDAMCRMVMAGL
CCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHC
GVGVLPRIAAEPHVKSMGLSLVGLRDAWARRSLLIGMRDPAGLTVSARLLISHLCGDRAP
CCCHHHHHCCCCCHHHCCCEEEEHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]