Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 94311054

GI number: 94311054

Start: 2297922

End: 2298809

Strand: Reverse

Name: nlpD [C]

Synonym: Rmet_2116

Alternate gene names: 94311054

Gene position: 2298809-2297922 (Counterclockwise)

Preceding gene: 94311055

Following gene: 94311053

Centisome position: 58.52

GC content: 62.73

Gene sequence:

>888_bases
ATGCACAACATCGTGAAATCGGATTCTTTCGCGCGAGTCGGACAACGTTTAAGCGTCGTGGCGATCGCGGCCGTCCTGGC
CGCCTGCGCCAACTCCCCCATGCCCGCCCCTGTGGTGGATCGCACCTCCACGGCCGGCGCCCAGCAGGCAGCCTCCACCG
AGCCGGCGCCGCCCGGATACTATCGGGTCAAGCGAGGCGATACGCTTTACCGTATCGCGCTCGAAAATGGCCAGTCGTAT
CGGGATGTGGCGAGCTGGAACAATATGGCCAATGCGAACCAGATAGAGGTTGGCCAACTGTTGCGCGTGGTGCCGCCGGG
TGCCGACGTGAACGCCGCGCCTGGCGTGGCAACCGCCCCGGTGGCGTCGGGTGTCGTCCAGTCCCAGCCGATCGATTCAT
CCCGTCCGGTAGGCGCGCCTGTCGGCGCGACGACCAGCACGCCAGCCGCTGTAGCGGCGGCGCCTGCATCGGCCGCGGCA
GCCCCGGCAGCAACGCCTTCGGCATCGGCTTCCGCGCCGGCGTCCGATATTCGCCTGGCTTGGCCGGCCAGCGGCCAATT
GATCGGTAAATTTGACGAGAAGAGCAACAAAGGCATTGATATTGCGGGTAAAAAGGGCGATGCAGTCCTGGCCGCCGATG
AGGGGCGAGTGATTCACGTTGGCCCCTTGCGCGGCTACGGGAATCTTGTCATCATCAAACACAATGACACGTACTTGACG
GCCTACGGGCACAACGACAAGGTGCTGGTCACAGAGCAATCTACGGTCCGCAAGGGCCAAAAGATTGCCGAAATGGGTAA
CAGTGATTCTGACAGGGTCAAGCTGCACTTCGAGGTCCGCAAAAACGGGAAACCGGTCGATCCGATGCGGTATCTGCCGC
CACAGTGA

Upstream 100 bases:

>100_bases
TGCTGCTGATCGAGCGCCTCAACCGGCATCGTTTTCACAGAACTGCGCTTGAAGCGGTTTTCTTTGTGCCCTTAAAATCG
GGCACCATCTGAGTCGAACT

Downstream 100 bases:

>100_bases
GGTTTCATGCCACGCCAGAAAACTGTCTCATCCGGAGTTGTCAGCAGGACCCGTCGTCCCAAGCAGCCGGAAGGAAAGGC
TGGAGTGGCAAGACCTGACG

Product: metallopeptidase, M23B subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MHNIVKSDSFARVGQRLSVVAIAAVLAACANSPMPAPVVDRTSTAGAQQAASTEPAPPGYYRVKRGDTLYRIALENGQSY
RDVASWNNMANANQIEVGQLLRVVPPGADVNAAPGVATAPVASGVVQSQPIDSSRPVGAPVGATTSTPAAVAAAPASAAA
APAATPSASASAPASDIRLAWPASGQLIGKFDEKSNKGIDIAGKKGDAVLAADEGRVIHVGPLRGYGNLVIIKHNDTYLT
AYGHNDKVLVTEQSTVRKGQKIAEMGNSDSDRVKLHFEVRKNGKPVDPMRYLPPQ

Sequences:

>Translated_295_residues
MHNIVKSDSFARVGQRLSVVAIAAVLAACANSPMPAPVVDRTSTAGAQQAASTEPAPPGYYRVKRGDTLYRIALENGQSY
RDVASWNNMANANQIEVGQLLRVVPPGADVNAAPGVATAPVASGVVQSQPIDSSRPVGAPVGATTSTPAAVAAAPASAAA
APAATPSASASAPASDIRLAWPASGQLIGKFDEKSNKGIDIAGKKGDAVLAADEGRVIHVGPLRGYGNLVIIKHNDTYLT
AYGHNDKVLVTEQSTVRKGQKIAEMGNSDSDRVKLHFEVRKNGKPVDPMRYLPPQ
>Mature_295_residues
MHNIVKSDSFARVGQRLSVVAIAAVLAACANSPMPAPVVDRTSTAGAQQAASTEPAPPGYYRVKRGDTLYRIALENGQSY
RDVASWNNMANANQIEVGQLLRVVPPGADVNAAPGVATAPVASGVVQSQPIDSSRPVGAPVGATTSTPAAVAAAPASAAA
APAATPSASASAPASDIRLAWPASGQLIGKFDEKSNKGIDIAGKKGDAVLAADEGRVIHVGPLRGYGNLVIIKHNDTYLT
AYGHNDKVLVTEQSTVRKGQKIAEMGNSDSDRVKLHFEVRKNGKPVDPMRYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=255, Percent_Identity=40.3921568627451, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI87082174, Length=280, Percent_Identity=32.1428571428571, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI87082297, Length=118, Percent_Identity=36.4406779661017, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30528; Mature: 30528

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNIVKSDSFARVGQRLSVVAIAAVLAACANSPMPAPVVDRTSTAGAQQAASTEPAPPGY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCE
YRVKRGDTLYRIALENGQSYRDVASWNNMANANQIEVGQLLRVVPPGADVNAAPGVATAP
EEEECCCEEEEEEECCCCCHHHHHHHCCCCCCCEECHHHHHEECCCCCCCCCCCCCCCCH
VASGVVQSQPIDSSRPVGAPVGATTSTPAAVAAAPASAAAAPAATPSASASAPASDIRLA
HHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
WPASGQLIGKFDEKSNKGIDIAGKKGDAVLAADEGRVIHVGPLRGYGNLVIIKHNDTYLT
CCCCCCEEEECCCCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCEEEE
AYGHNDKVLVTEQSTVRKGQKIAEMGNSDSDRVKLHFEVRKNGKPVDPMRYLPPQ
EECCCCEEEEECHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MHNIVKSDSFARVGQRLSVVAIAAVLAACANSPMPAPVVDRTSTAGAQQAASTEPAPPGY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCE
YRVKRGDTLYRIALENGQSYRDVASWNNMANANQIEVGQLLRVVPPGADVNAAPGVATAP
EEEECCCEEEEEEECCCCCHHHHHHHCCCCCCCEECHHHHHEECCCCCCCCCCCCCCCCH
VASGVVQSQPIDSSRPVGAPVGATTSTPAAVAAAPASAAAAPAATPSASASAPASDIRLA
HHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
WPASGQLIGKFDEKSNKGIDIAGKKGDAVLAADEGRVIHVGPLRGYGNLVIIKHNDTYLT
CCCCCCEEEECCCCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCEEEE
AYGHNDKVLVTEQSTVRKGQKIAEMGNSDSDRVKLHFEVRKNGKPVDPMRYLPPQ
EECCCCEEEEECHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]