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The map label for this gene is ugpB [H]

Identifier: 94310993

GI number: 94310993

Start: 2226265

End: 2227575

Strand: Reverse

Name: ugpB [H]

Synonym: Rmet_2055

Alternate gene names: 94310993

Gene position: 2227575-2226265 (Counterclockwise)

Preceding gene: 94310997

Following gene: 94310992

Centisome position: 56.71

GC content: 61.1

Gene sequence:

>1311_bases
ATGTCTTTTCCACGCACCGCGTTGAAGTTCGCCGCCGTTGCAAGCCTGGCCTTGGCCGGTACGGCCCATGCCGCAGTTGA
GATCCAGTGGTGGCACGCCATGCAGGGCGCGCTGAACGACAAGGTCAACGAGATTGCCGACAAGTTCAACGCCAGCCAGT
CCGACTACAAGATCGTGCCGGTCAACAAGGGCAATTACGACGAGACCATGGCAGCCGGCATTGCGGCATTCCGCGCGGGC
GGCGCGCCGGCCATCCTGCAGGTATTCGAGGTGGGTACCGCGACGATGATGAGCGCCAAGGGCGCCATCAAGCCGGTGTC
GCAGGTGATGAAGGACGCTGGCGAGAAGTTCGATCAAAAGGCGTACATCCCGGCAGTGGCGGGTTACTACACGTCGTCGA
AGGGCGAGATGCTGTCGTTCCCCTTCAATAGCTCGACGACTGTCTTCTATTACAACAAGGATGCCTTCAAGAAGGCGGGC
ATTTCCGCTCCACCCAAGACCTGGCCCGAGGTGATGCAGTACTCGGCCAAGCTCAAGGCGTCGGGCCAGAACTGCGCCTA
TACCACCGACTGGCAGAGCTGGGTGCACCTGGAGAGCTTCTCCGCCTGGCACAACACGCTCTTCGCCACGAAGAACAACG
GTTTTGGCGGCACCGACGCGCGACTGGTCTTCAATAGCCCGCTGCATGTGAAGCACATCACGAATCTGCAGGAGATGGTG
AAGAAGGGCTACTTCAGCTACGGCGGCCGCAAGGCGGAGTCGCAGGCCAAGTTCTACAACGGCGAGTGCGCGATGTTCAC
GGGCTCGTCCGCATCGCTGGCCAATATCCGCAAGAATGCCAAATTCCAGTTTGGTGTGTCGCAACTGCCGTACTACCCGG
ACGTGCCGGGCGCGCCGCAGAACACGATCATCGGCGGTGCATCGCTGTGGGTGATGGGCGGCAAGAAGGCCGACGAGTAC
AAGGGCGTGGCCAAGTTCTTCACGTTCCTGTCGCGACCGGAGATCCAGTCGGACTGGCACCAGGCCACTGGCTACCTGCC
GGTGACGATGGCTGCGTATGAGATGACGAGGAAGTCGGGTTACTACGACAAGAACCCGGGTGCCGATGTCTCGGTCGAGC
AGATGGTCGTGAAGACCACCGACAAGTCGCGCGGCGTGCGTCTCGGCAACCTCGTGCAGATCCGTACCGTGATCGACGAG
GAACTCGAAGCGGTGTGGGCTGGCAAGAAGGAGCCGAAGGCCGCGCTCGACAACGCCGTGGCACGTGGCAACGAACTGCT
GGAGCGTTTCCAGAAGACCGCCAGGGAATAA

Upstream 100 bases:

>100_bases
CATAAGAGCGGCGTAACATGCCTGTCACAAAAAATGCATACAGTCGGTCGCTTTTTCAAAAAAATTGGTCGGACCGAACA
CAGCCTCAGGAGAAATGCCA

Downstream 100 bases:

>100_bases
GCCCCTGCGGTGATGGAGCTGAAGCGGGCGGCGGCACAATCGTCGCCCGTTTGCGTTTGTTTTGGGAACCCCCTCGATGG
AAAAGCGCGTCGTCTTTCGC

Product: glycerol-3-phosphate ABC transporter periplasmic-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSFPRTALKFAAVASLALAGTAHAAVEIQWWHAMQGALNDKVNEIADKFNASQSDYKIVPVNKGNYDETMAAGIAAFRAG
GAPAILQVFEVGTATMMSAKGAIKPVSQVMKDAGEKFDQKAYIPAVAGYYTSSKGEMLSFPFNSSTTVFYYNKDAFKKAG
ISAPPKTWPEVMQYSAKLKASGQNCAYTTDWQSWVHLESFSAWHNTLFATKNNGFGGTDARLVFNSPLHVKHITNLQEMV
KKGYFSYGGRKAESQAKFYNGECAMFTGSSASLANIRKNAKFQFGVSQLPYYPDVPGAPQNTIIGGASLWVMGGKKADEY
KGVAKFFTFLSRPEIQSDWHQATGYLPVTMAAYEMTRKSGYYDKNPGADVSVEQMVVKTTDKSRGVRLGNLVQIRTVIDE
ELEAVWAGKKEPKAALDNAVARGNELLERFQKTARE

Sequences:

>Translated_436_residues
MSFPRTALKFAAVASLALAGTAHAAVEIQWWHAMQGALNDKVNEIADKFNASQSDYKIVPVNKGNYDETMAAGIAAFRAG
GAPAILQVFEVGTATMMSAKGAIKPVSQVMKDAGEKFDQKAYIPAVAGYYTSSKGEMLSFPFNSSTTVFYYNKDAFKKAG
ISAPPKTWPEVMQYSAKLKASGQNCAYTTDWQSWVHLESFSAWHNTLFATKNNGFGGTDARLVFNSPLHVKHITNLQEMV
KKGYFSYGGRKAESQAKFYNGECAMFTGSSASLANIRKNAKFQFGVSQLPYYPDVPGAPQNTIIGGASLWVMGGKKADEY
KGVAKFFTFLSRPEIQSDWHQATGYLPVTMAAYEMTRKSGYYDKNPGADVSVEQMVVKTTDKSRGVRLGNLVQIRTVIDE
ELEAVWAGKKEPKAALDNAVARGNELLERFQKTARE
>Mature_435_residues
SFPRTALKFAAVASLALAGTAHAAVEIQWWHAMQGALNDKVNEIADKFNASQSDYKIVPVNKGNYDETMAAGIAAFRAGG
APAILQVFEVGTATMMSAKGAIKPVSQVMKDAGEKFDQKAYIPAVAGYYTSSKGEMLSFPFNSSTTVFYYNKDAFKKAGI
SAPPKTWPEVMQYSAKLKASGQNCAYTTDWQSWVHLESFSAWHNTLFATKNNGFGGTDARLVFNSPLHVKHITNLQEMVK
KGYFSYGGRKAESQAKFYNGECAMFTGSSASLANIRKNAKFQFGVSQLPYYPDVPGAPQNTIIGGASLWVMGGKKADEYK
GVAKFFTFLSRPEIQSDWHQATGYLPVTMAAYEMTRKSGYYDKNPGADVSVEQMVVKTTDKSRGVRLGNLVQIRTVIDEE
LEAVWAGKKEPKAALDNAVARGNELLERFQKTARE

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=420, Percent_Identity=60, Blast_Score=524, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47794; Mature: 47662

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPRTALKFAAVASLALAGTAHAAVEIQWWHAMQGALNDKVNEIADKFNASQSDYKIVP
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
VNKGNYDETMAAGIAAFRAGGAPAILQVFEVGTATMMSAKGAIKPVSQVMKDAGEKFDQK
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
AYIPAVAGYYTSSKGEMLSFPFNSSTTVFYYNKDAFKKAGISAPPKTWPEVMQYSAKLKA
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHC
SGQNCAYTTDWQSWVHLESFSAWHNTLFATKNNGFGGTDARLVFNSPLHVKHITNLQEMV
CCCCCEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHH
KKGYFSYGGRKAESQAKFYNGECAMFTGSSASLANIRKNAKFQFGVSQLPYYPDVPGAPQ
HHHHHHCCCCCCCCCHHEECCEEEEEECCCCHHHHHHHCCEEEECHHHCCCCCCCCCCCC
NTIIGGASLWVMGGKKADEYKGVAKFFTFLSRPEIQSDWHQATGYLPVTMAAYEMTRKSG
CCEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC
YYDKNPGADVSVEQMVVKTTDKSRGVRLGNLVQIRTVIDEELEAVWAGKKEPKAALDNAV
CCCCCCCCCCCHHHHEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ARGNELLERFQKTARE
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SFPRTALKFAAVASLALAGTAHAAVEIQWWHAMQGALNDKVNEIADKFNASQSDYKIVP
CCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
VNKGNYDETMAAGIAAFRAGGAPAILQVFEVGTATMMSAKGAIKPVSQVMKDAGEKFDQK
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
AYIPAVAGYYTSSKGEMLSFPFNSSTTVFYYNKDAFKKAGISAPPKTWPEVMQYSAKLKA
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHC
SGQNCAYTTDWQSWVHLESFSAWHNTLFATKNNGFGGTDARLVFNSPLHVKHITNLQEMV
CCCCCEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHH
KKGYFSYGGRKAESQAKFYNGECAMFTGSSASLANIRKNAKFQFGVSQLPYYPDVPGAPQ
HHHHHHCCCCCCCCCHHEECCEEEEEECCCCHHHHHHHCCEEEECHHHCCCCCCCCCCCC
NTIIGGASLWVMGGKKADEYKGVAKFFTFLSRPEIQSDWHQATGYLPVTMAAYEMTRKSG
CCEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC
YYDKNPGADVSVEQMVVKTTDKSRGVRLGNLVQIRTVIDEELEAVWAGKKEPKAALDNAV
CCCCCCCCCCCHHHHEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ARGNELLERFQKTARE
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA