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The map label for this gene is yhcM [H]

Identifier: 94310985

GI number: 94310985

Start: 2215382

End: 2216479

Strand: Reverse

Name: yhcM [H]

Synonym: Rmet_2047

Alternate gene names: 94310985

Gene position: 2216479-2215382 (Counterclockwise)

Preceding gene: 94310986

Following gene: 335055577

Centisome position: 56.43

GC content: 60.47

Gene sequence:

>1098_bases
ATGAACGTCACCGAGTTTTACGAACACGAACTCAAGCAGCGCGGCTATCAGTCAGATGAGGCGCAGCGTCGCGCCGTGGA
GCGGCTCCAGCAATGCTATGACGAGTGGGTGGCCTACAAGGGCCGTCGAAACAGCACGCTGAAGAAGTTGCTGGTACACC
CCGAGGTGCCGAAGGGCGTCTACATGTGGGGTGGGGTGGGGCGCGGCAAGTCGTTCCTGATGGACAGTTTCTATTCCTGC
GTGCCGGTGGTGCGCAAGACGCGGCTCCACTTCCACGAGTTCATGCGCGAGGTGCATCGGGAACTCGAGGAACTGCGCGG
TCGGGCAGACCCGCTGGACGAACTGGCGAAACGCATTGCGCGCCGCTTCCGGTTGATCTGCTTCGACGAGTTCCACGTCA
ATGATGTGGCGGATGCGATGATCCTGCATCGTCTGCTGCAGCAGTTGTTCGAGAACGGTGTGCAGTTCGTGATGACGTCG
AACTATCGCCCGGATCTGCTTTACCCGGACGGCCTTCACCGTGATCGGGTGCTGCCGGCTATTGCGCTGCTGCAGCAAAA
GCTCGATGTACTCAATGTCGATGCCGGCATCGACTACCGCAAGCGGGCGCTGGAACAGGTACAGGCCTACCATACGCCGC
TGAACCGGGAAGCCAGCGCCGCGCTGCGCGATGCGTTCGTGTCCATCGCGGGTACGGCGGACGAGTCTCCGATCCTGCAT
ATCGAACATCGCGAGATCAAGGCGTTGCGCAAGGCCAATGGCGTGGTCTGGTTCGATTTCGCGACCTTGTGCGGCGGCCC
GCGCTCCCAGAACGACTATCTGGAGATTGCGTCACAGTTTCATACGGTGATCCTGTCGGATGTGCCGAAGATGACGCCGC
GGATGTCATCGGAGGCGCGCCGCTTCACCTGGCTGATCGATGTTTTCTACGATCACAAGGTCAAGCTGCTGATGTCCGCC
GAGGTGCCGGCCGACGAACTCTATACCGAAGGCCAGATGGCGAACGAGTTTCATCGGACGGTCTCGCGGATCATCGAGAT
GCAGTCGCGGGAGTACCTCGAGTCCGAACGTCGTACGGTCGACACCTCGTTGACCTGA

Upstream 100 bases:

>100_bases
CAGCTCAACATGTAAGGCATTTGCCTCGCAAAGTGTGAGCATCGGCGCGCCGCCATTCGCGGCGCGCCGTTTTCACTTGC
AGCCCCCCGGTTGAACCCAC

Downstream 100 bases:

>100_bases
CAGGTTGGCAGGGGAGTCTGAAGGCCGTTCGAACCCGCTCCCCTGTTTGCACGGCCAGACCCTGACTCCATTTTTGGAAG
TTTGATCTTTATCAAGGCAT

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVTEFYEHELKQRGYQSDEAQRRAVERLQQCYDEWVAYKGRRNSTLKKLLVHPEVPKGVYMWGGVGRGKSFLMDSFYSC
VPVVRKTRLHFHEFMREVHRELEELRGRADPLDELAKRIARRFRLICFDEFHVNDVADAMILHRLLQQLFENGVQFVMTS
NYRPDLLYPDGLHRDRVLPAIALLQQKLDVLNVDAGIDYRKRALEQVQAYHTPLNREASAALRDAFVSIAGTADESPILH
IEHREIKALRKANGVVWFDFATLCGGPRSQNDYLEIASQFHTVILSDVPKMTPRMSSEARRFTWLIDVFYDHKVKLLMSA
EVPADELYTEGQMANEFHRTVSRIIEMQSREYLESERRTVDTSLT

Sequences:

>Translated_365_residues
MNVTEFYEHELKQRGYQSDEAQRRAVERLQQCYDEWVAYKGRRNSTLKKLLVHPEVPKGVYMWGGVGRGKSFLMDSFYSC
VPVVRKTRLHFHEFMREVHRELEELRGRADPLDELAKRIARRFRLICFDEFHVNDVADAMILHRLLQQLFENGVQFVMTS
NYRPDLLYPDGLHRDRVLPAIALLQQKLDVLNVDAGIDYRKRALEQVQAYHTPLNREASAALRDAFVSIAGTADESPILH
IEHREIKALRKANGVVWFDFATLCGGPRSQNDYLEIASQFHTVILSDVPKMTPRMSSEARRFTWLIDVFYDHKVKLLMSA
EVPADELYTEGQMANEFHRTVSRIIEMQSREYLESERRTVDTSLT
>Mature_365_residues
MNVTEFYEHELKQRGYQSDEAQRRAVERLQQCYDEWVAYKGRRNSTLKKLLVHPEVPKGVYMWGGVGRGKSFLMDSFYSC
VPVVRKTRLHFHEFMREVHRELEELRGRADPLDELAKRIARRFRLICFDEFHVNDVADAMILHRLLQQLFENGVQFVMTS
NYRPDLLYPDGLHRDRVLPAIALLQQKLDVLNVDAGIDYRKRALEQVQAYHTPLNREASAALRDAFVSIAGTADESPILH
IEHREIKALRKANGVVWFDFATLCGGPRSQNDYLEIASQFHTVILSDVPKMTPRMSSEARRFTWLIDVFYDHKVKLLMSA
EVPADELYTEGQMANEFHRTVSRIIEMQSREYLESERRTVDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=402, Percent_Identity=33.8308457711443, Blast_Score=228, Evalue=9e-60,
Organism=Escherichia coli, GI1789627, Length=365, Percent_Identity=46.027397260274, Blast_Score=303, Evalue=1e-83,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=32.0481927710843, Blast_Score=212, Evalue=3e-55,
Organism=Saccharomyces cerevisiae, GI6320783, Length=326, Percent_Identity=33.1288343558282, Blast_Score=171, Evalue=2e-43,
Organism=Drosophila melanogaster, GI20129913, Length=350, Percent_Identity=34.5714285714286, Blast_Score=194, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42607; Mature: 42607

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTEFYEHELKQRGYQSDEAQRRAVERLQQCYDEWVAYKGRRNSTLKKLLVHPEVPKGV
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYSCVPVVRKTRLHFHEFMREVHRELEELRGRADPLDELAKRIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RRFRLICFDEFHVNDVADAMILHRLLQQLFENGVQFVMTSNYRPDLLYPDGLHRDRVLPA
HHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
IALLQQKLDVLNVDAGIDYRKRALEQVQAYHTPLNREASAALRDAFVSIAGTADESPILH
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
IEHREIKALRKANGVVWFDFATLCGGPRSQNDYLEIASQFHTVILSDVPKMTPRMSSEAR
ECHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RFTWLIDVFYDHKVKLLMSAEVPADELYTEGQMANEFHRTVSRIIEMQSREYLESERRTV
HHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
CCCCC
>Mature Secondary Structure
MNVTEFYEHELKQRGYQSDEAQRRAVERLQQCYDEWVAYKGRRNSTLKKLLVHPEVPKGV
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYSCVPVVRKTRLHFHEFMREVHRELEELRGRADPLDELAKRIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RRFRLICFDEFHVNDVADAMILHRLLQQLFENGVQFVMTSNYRPDLLYPDGLHRDRVLPA
HHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
IALLQQKLDVLNVDAGIDYRKRALEQVQAYHTPLNREASAALRDAFVSIAGTADESPILH
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
IEHREIKALRKANGVVWFDFATLCGGPRSQNDYLEIASQFHTVILSDVPKMTPRMSSEAR
ECHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RFTWLIDVFYDHKVKLLMSAEVPADELYTEGQMANEFHRTVSRIIEMQSREYLESERRTV
HHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]