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The map label for this gene is rbfA

Identifier: 94310968

GI number: 94310968

Start: 2196245

End: 2196616

Strand: Reverse

Name: rbfA

Synonym: Rmet_2030

Alternate gene names: 94310968

Gene position: 2196616-2196245 (Counterclockwise)

Preceding gene: 94310969

Following gene: 94310967

Centisome position: 55.92

GC content: 59.95

Gene sequence:

>372_bases
ATGGCCAAGAAAGGCAATATCACCTCCCGTAACCTGCGCCTCTCCGATCAGATCCAGAAGGAGCTGGCGGAGATGATCCA
GCGCGAGATCCGCGATCCGCGCCTGGGCCTGGTAACGCTGCAGTCGGTGTCGCTGACGCCCGACTATGCGCATGCCAAGG
TCTACTTCACGGTGCTCGGCGCCGAACCCGAGACGGCTGCCGCCATCCTCAAGGAAAAGGCCGGCTACCTCCATTCGTTG
CTGTTCAAGCGACTGCATATCCATACCGTGCCGACGCTGCATTTCCATCACGATACGTCGGTGGAGCACGCGATCGAGAT
GTCGAAGCTGATCAACGAAGCGAACGCTACGCGCGCCAAGGACGACGAGTAA

Upstream 100 bases:

>100_bases
GTGTACGAAATCACAGAGGTGGCGCGTACGCTGTAAGGCGATACGCAAAGACGGCAGGCTCCGGCCTGCCGTTTTCACTT
CTGCTCACGCTCAGTTTTGA

Downstream 100 bases:

>100_bases
GTCCACGGGTGCCCAAGTGGTGCCGGTGGATGCCGGCACCACGTTTTTCCTCTCCTGCAATGACCGATTCCTCCGCGACC
CGACCGCCCCGGCTGCCACG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MAKKGNITSRNLRLSDQIQKELAEMIQREIRDPRLGLVTLQSVSLTPDYAHAKVYFTVLGAEPETAAAILKEKAGYLHSL
LFKRLHIHTVPTLHFHHDTSVEHAIEMSKLINEANATRAKDDE

Sequences:

>Translated_123_residues
MAKKGNITSRNLRLSDQIQKELAEMIQREIRDPRLGLVTLQSVSLTPDYAHAKVYFTVLGAEPETAAAILKEKAGYLHSL
LFKRLHIHTVPTLHFHHDTSVEHAIEMSKLINEANATRAKDDE
>Mature_122_residues
AKKGNITSRNLRLSDQIQKELAEMIQREIRDPRLGLVTLQSVSLTPDYAHAKVYFTVLGAEPETAAAILKEKAGYLHSLL
FKRLHIHTVPTLHFHHDTSVEHAIEMSKLINEANATRAKDDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=108, Percent_Identity=41.6666666666667, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RALME (Q1LLR7)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_584178.1
- ProteinModelPortal:   Q1LLR7
- SMR:   Q1LLR7
- STRING:   Q1LLR7
- GeneID:   4038837
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_2030
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q1LLR7
- ProtClustDB:   PRK00521
- BioCyc:   RMET266264:RMET_2030-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13895; Mature: 13764

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKGNITSRNLRLSDQIQKELAEMIQREIRDPRLGLVTLQSVSLTPDYAHAKVYFTVLG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEC
AEPETAAAILKEKAGYLHSLLFKRLHIHTVPTLHFHHDTSVEHAIEMSKLINEANATRAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC
DDE
CCC
>Mature Secondary Structure 
AKKGNITSRNLRLSDQIQKELAEMIQREIRDPRLGLVTLQSVSLTPDYAHAKVYFTVLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEC
AEPETAAAILKEKAGYLHSLLFKRLHIHTVPTLHFHHDTSVEHAIEMSKLINEANATRAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC
DDE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA