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The map label for this gene is amaB [H]

Identifier: 94310883

GI number: 94310883

Start: 2115488

End: 2116750

Strand: Direct

Name: amaB [H]

Synonym: Rmet_1945

Alternate gene names: 94310883

Gene position: 2115488-2116750 (Clockwise)

Preceding gene: 94310882

Following gene: 94310885

Centisome position: 53.86

GC content: 65.16

Gene sequence:

>1263_bases
ATGACCATCGCCACCCCTTCCCTCGGCCAGTCGATCCTCGAACGCGCCGAAGCCCTTGCCCGCTTCTCGGATATGGAGGA
TGGCCTGACCTGCGCCTTTCTGACGCCCGCCCACCGCCAGGCACAAGCGCAGTTGGCACGGTGGATGGAGGATGCCGGCA
TGACGGTAAGGATCGACGCGATCGGCAACGTGATTGGCCGTTACGCCGCCGATTCGGCCACGGCCAATCCGAAGGTGCTG
ATGACGGGCTCGCACTTCGACACGGTGCGCAATGGCGGCCGCTATGACGGCAGGCTCGGCATCCTGCTGCCAATTGCCGT
CGTTGGCGCGCTGCGCGATGCCGGCATCCGCCTGCCCTATCACTTCGAAGTGGTTGGATTTGCCGAGGAAGAAGGCCTGC
GTTTCAAGACCAGCTTTCTGGCCAGTAGCGTGCTGGCGGGACGCTTCGACCCCGCGCTGCTCGACCGCGCTGACGTGGAT
GGCGTGACGATGCGCGAGGCGCTGGCCGACTCCGGCCTGCCCGGCGCCGGCGACATCGACGCCTTGCGCGCTGCGGCGGT
CGATCCGTCGACATTGGCTGGCTTTGTCGAAGTCCATATCGAACAGGGCCCGGTGCTGCTCAATCGCGGATTGCCGCTCG
GCATCGTGACCCAGATTGCCGGAAGCAGCCGCTTCCAGGTACGCGCGGAGGGCCTGGCCAGCCACGCTGGCACCACGCCG
ATGGATATGCGCCGCGATGCCGCGACGGGTGCCGCCGAAATGATCCTGCTCGTGGAGTCTCGCTGCGCCCAGGTGCCGAC
GCTGGTGGGAACGGTGGGCCAGCTTCAGGTGCCGAACGGGTCAAGCAACGTGATTCCGGCCGCGTGCGTGTTCTCGATGG
ACATTCGCGCCGGCGAAGACGGCATCCGCGAGGCCGCCATCGCCGATATCGTCGCCGGGATCGAGCGGATTGCCGCAAAG
CGCAGCCTGAAGGCCAGCGTGGAGCGCGTGACGCCGGTCAACAATGCGCCTTGCGCGCGCTGGCTGATGGATCAATTCGG
CGCGGTGCTGAAAAAGCGTGGCCATGAAGTGTTCGAACTGCCTTCAGGCGCAGGCCACGATGCGATGATGATGCACCGCA
TCATCGATGTGGCGATGCTGTTCGTCCGATGCGGCAATGGCGGTATCAGCCACAACCCGCTCGAGACGATCACCGAGGAA
GACGCGCAACAGGCAGCCGAAGTCTTCGTGGACTTCCTGCGGCATTTCCGGGTGAAAGACTGA

Upstream 100 bases:

>100_bases
AGCTCTGGATTGCCTGGAAAACCTGGCTGAAGAATGGCTAACCCCCGGCTTCGTTCTGCTTTTCTGCCTTTCTGCTTTCT
GCCCTACTGTCGTTGACGCC

Downstream 100 bases:

>100_bases
GCGGACTGGGCCTGGGGGGGGCCTGGGGGGGGCCTGGGGGGGGCGGTACGGCAAAGCCGCGCAACCACGCCAGGATCACT
CTGAAGCGGTTGCTCAGCCG

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTIATPSLGQSILERAEALARFSDMEDGLTCAFLTPAHRQAQAQLARWMEDAGMTVRIDAIGNVIGRYAADSATANPKVL
MTGSHFDTVRNGGRYDGRLGILLPIAVVGALRDAGIRLPYHFEVVGFAEEEGLRFKTSFLASSVLAGRFDPALLDRADVD
GVTMREALADSGLPGAGDIDALRAAAVDPSTLAGFVEVHIEQGPVLLNRGLPLGIVTQIAGSSRFQVRAEGLASHAGTTP
MDMRRDAATGAAEMILLVESRCAQVPTLVGTVGQLQVPNGSSNVIPAACVFSMDIRAGEDGIREAAIADIVAGIERIAAK
RSLKASVERVTPVNNAPCARWLMDQFGAVLKKRGHEVFELPSGAGHDAMMMHRIIDVAMLFVRCGNGGISHNPLETITEE
DAQQAAEVFVDFLRHFRVKD

Sequences:

>Translated_420_residues
MTIATPSLGQSILERAEALARFSDMEDGLTCAFLTPAHRQAQAQLARWMEDAGMTVRIDAIGNVIGRYAADSATANPKVL
MTGSHFDTVRNGGRYDGRLGILLPIAVVGALRDAGIRLPYHFEVVGFAEEEGLRFKTSFLASSVLAGRFDPALLDRADVD
GVTMREALADSGLPGAGDIDALRAAAVDPSTLAGFVEVHIEQGPVLLNRGLPLGIVTQIAGSSRFQVRAEGLASHAGTTP
MDMRRDAATGAAEMILLVESRCAQVPTLVGTVGQLQVPNGSSNVIPAACVFSMDIRAGEDGIREAAIADIVAGIERIAAK
RSLKASVERVTPVNNAPCARWLMDQFGAVLKKRGHEVFELPSGAGHDAMMMHRIIDVAMLFVRCGNGGISHNPLETITEE
DAQQAAEVFVDFLRHFRVKD
>Mature_419_residues
TIATPSLGQSILERAEALARFSDMEDGLTCAFLTPAHRQAQAQLARWMEDAGMTVRIDAIGNVIGRYAADSATANPKVLM
TGSHFDTVRNGGRYDGRLGILLPIAVVGALRDAGIRLPYHFEVVGFAEEEGLRFKTSFLASSVLAGRFDPALLDRADVDG
VTMREALADSGLPGAGDIDALRAAAVDPSTLAGFVEVHIEQGPVLLNRGLPLGIVTQIAGSSRFQVRAEGLASHAGTTPM
DMRRDAATGAAEMILLVESRCAQVPTLVGTVGQLQVPNGSSNVIPAACVFSMDIRAGEDGIREAAIADIVAGIERIAAKR
SLKASVERVTPVNNAPCARWLMDQFGAVLKKRGHEVFELPSGAGHDAMMMHRIIDVAMLFVRCGNGGISHNPLETITEED
AQQAAEVFVDFLRHFRVKD

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=391, Percent_Identity=29.923273657289, Blast_Score=153, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 44749; Mature: 44618

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIATPSLGQSILERAEALARFSDMEDGLTCAFLTPAHRQAQAQLARWMEDAGMTVRIDA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEHH
IGNVIGRYAADSATANPKVLMTGSHFDTVRNGGRYDGRLGILLPIAVVGALRDAGIRLPY
HHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCE
HFEVVGFAEEEGLRFKTSFLASSVLAGRFDPALLDRADVDGVTMREALADSGLPGAGDID
EEEEEEEECCCCCEEHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCHH
ALRAAAVDPSTLAGFVEVHIEQGPVLLNRGLPLGIVTQIAGSSRFQVRAEGLASHAGTTP
HHHHHCCCHHHHEEEEEEEECCCCEEEECCCCHHHHHHHCCCCCEEEEHHHHHHCCCCCC
MDMRRDAATGAAEMILLVESRCAQVPTLVGTVGQLQVPNGSSNVIPAACVFSMDIRAGED
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCCHHHHEEEECCCCCCH
GIREAAIADIVAGIERIAAKRSLKASVERVTPVNNAPCARWLMDQFGAVLKKRGHEVFEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
PSGAGHDAMMMHRIIDVAMLFVRCGNGGISHNPLETITEEDAQQAAEVFVDFLRHFRVKD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIATPSLGQSILERAEALARFSDMEDGLTCAFLTPAHRQAQAQLARWMEDAGMTVRIDA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEHH
IGNVIGRYAADSATANPKVLMTGSHFDTVRNGGRYDGRLGILLPIAVVGALRDAGIRLPY
HHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCE
HFEVVGFAEEEGLRFKTSFLASSVLAGRFDPALLDRADVDGVTMREALADSGLPGAGDID
EEEEEEEECCCCCEEHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCHH
ALRAAAVDPSTLAGFVEVHIEQGPVLLNRGLPLGIVTQIAGSSRFQVRAEGLASHAGTTP
HHHHHCCCHHHHEEEEEEEECCCCEEEECCCCHHHHHHHCCCCCEEEEHHHHHHCCCCCC
MDMRRDAATGAAEMILLVESRCAQVPTLVGTVGQLQVPNGSSNVIPAACVFSMDIRAGED
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCCCHHHHEEEECCCCCCH
GIREAAIADIVAGIERIAAKRSLKASVERVTPVNNAPCARWLMDQFGAVLKKRGHEVFEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
PSGAGHDAMMMHRIIDVAMLFVRCGNGGISHNPLETITEEDAQQAAEVFVDFLRHFRVKD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]