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The map label for this gene is ydiU [C]

Identifier: 94310802

GI number: 94310802

Start: 2021691

End: 2023325

Strand: Direct

Name: ydiU [C]

Synonym: Rmet_1864

Alternate gene names: 94310802

Gene position: 2021691-2023325 (Clockwise)

Preceding gene: 94310794

Following gene: 94310803

Centisome position: 51.47

GC content: 63.85

Gene sequence:

>1635_bases
ATGTGCACTCATACTGGGCATTCGGCAGCGCCATCATTGAGCGGTCTGATCGATGCGGAGCCCTGCCATTTTTGGCTGCC
CCTGATGCCCAACGAACCCACTGACGTCTTGCCCCCGACCTCCTTCAACGTACCTTTTGGCACGCGCCCCGGCATTGCCG
CGCTCGGCGAGCGCTTCTTCACGCGACTCAGCCCGACGCCACTGCCTTCGCCCTACCTTGTCAGTGTCGCGCCAGCCGCT
GCGGCGCTGCTGGGCTGGAACGAGACGGACCTTCAGGATGCGGTCAAGGACCCGGCCTTCATCGACAGCTTTGTCGGCAA
CGCGGTACCAGACTGGGCGGACCCGCTGGCCACGGTTTACTCCGGCCACCAGTTCGGCGTCTGGGCCGGACAGCTAGGCG
ATGGCCGCGCAATCCGGCTGGCCGAAGCGCAAACGCCAGGCGGCCCGTGGGAGATCCAACTGAAGGGGGGTGGACTCACC
CCCTACTCTCGTATGGCAGACGGCCGCGCGGTCCTGCGTTCCTCGATTCGCGAATACCTGTGCTCCGAGGCCATGTACGC
GCTCGGCGTGCCGACCACTCGGGCGTTGTCGATCATCGGCTCCGACGCGCCGGTACGTCGCGAAACCATCGAGACCTCTG
CCGTGGTCACGCGGCTGGCGCCAAGCTTCATCCGTTTCGGGCATTTCGAGCATTTTGCCGCACGTGAAGACCATGCGTCG
CTCCGGCAACTGGCCGATTTCGTCATCGACAACTTCTATCCAGCCTGCCGGAACGCCGCGAATCCGTACCAGGCCCTGCT
GCGCGACGTGTCCCTGCTGACGGCCGACATGGTCGCCCACTGGCAAGCGGTGGGCTTCTGCCACGGGGTGATGAACACCG
ACAACATGTCGATCCTGGGCCTGACGATCGACTACGGCCCATTTGGATTCCTCGACGCCTTCGACGCCAATCACATCTGT
AACCACTCCGACCAGCAGGGCCGCTACGCCTACAGCCAGCAGCCACAGGTCGCCTTCTGGAACCTGCACTGCCTGGCGCA
GGCGCTGCTGCCGCTCTGGCGCGACGCCAATGCGGCGGACCCCGAGGCCGAGAAGGCAGCAGCGGTGGAAGCCGCCCGTG
AGGCGCTCGACCCGTTCCGTGACCGCTACGCGGAGGCATTCTTCCGTCACTATCGCGCCAAGCTTGGCCTGCGCAGCGAA
CAGGAGCAAGACGAGACGCTGATGACCAATCTGTTCCGTGTACTTCACGAAAATCGCGTGGACTACACATCGTTCTGGCG
CAATCTTTCGCGCGTTTCCTCGCTGGATAACTCGCACGATGCAGCGGTACGCGACCTGTTCCTCGATCGCGCGGCCTGGG
ATGCGTGGGCAGCTGAGTACCGCGCCAGGCTCCAGAGCGAGCAGTCGGACGATGCGGCACGCACGACCGCCATGCTGGCC
ACGAATCCGAAGTACGTCCTGCGCAATCATATGGCCGAGACGGCAATCCGCGCCGCGCGCGACAAGGATTTCTCCGAAGT
GGATCGCCTTATGGCCGTTTTGTCGAAGCCATTCGACGAACAGCCCGAAGCCGAGTCATATGCAAAGCTGCCGCCCGATT
GGGCCTCCGGCCTTGAAGTCAGCTGTTCGTCGTAA

Upstream 100 bases:

>100_bases
GAGACCCTTGGGCTACAGGGGGAAACCGGTGCAAGTACAATACTGCGAGGCCAGATGTGTCTCAATATGTCGTTTTCCCC
TAGCACCATGCACTTGATGC

Downstream 100 bases:

>100_bases
TCCAGACCAAACGCCCCCAAGAATGCCGCACTACCAGGAAGCACGATCATGACCACGACCAAGACCGACGCCGAATGGCG
CTCCCAGTTGTCCGACATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MCTHTGHSAAPSLSGLIDAEPCHFWLPLMPNEPTDVLPPTSFNVPFGTRPGIAALGERFFTRLSPTPLPSPYLVSVAPAA
AALLGWNETDLQDAVKDPAFIDSFVGNAVPDWADPLATVYSGHQFGVWAGQLGDGRAIRLAEAQTPGGPWEIQLKGGGLT
PYSRMADGRAVLRSSIREYLCSEAMYALGVPTTRALSIIGSDAPVRRETIETSAVVTRLAPSFIRFGHFEHFAAREDHAS
LRQLADFVIDNFYPACRNAANPYQALLRDVSLLTADMVAHWQAVGFCHGVMNTDNMSILGLTIDYGPFGFLDAFDANHIC
NHSDQQGRYAYSQQPQVAFWNLHCLAQALLPLWRDANAADPEAEKAAAVEAAREALDPFRDRYAEAFFRHYRAKLGLRSE
QEQDETLMTNLFRVLHENRVDYTSFWRNLSRVSSLDNSHDAAVRDLFLDRAAWDAWAAEYRARLQSEQSDDAARTTAMLA
TNPKYVLRNHMAETAIRAARDKDFSEVDRLMAVLSKPFDEQPEAESYAKLPPDWASGLEVSCSS

Sequences:

>Translated_544_residues
MCTHTGHSAAPSLSGLIDAEPCHFWLPLMPNEPTDVLPPTSFNVPFGTRPGIAALGERFFTRLSPTPLPSPYLVSVAPAA
AALLGWNETDLQDAVKDPAFIDSFVGNAVPDWADPLATVYSGHQFGVWAGQLGDGRAIRLAEAQTPGGPWEIQLKGGGLT
PYSRMADGRAVLRSSIREYLCSEAMYALGVPTTRALSIIGSDAPVRRETIETSAVVTRLAPSFIRFGHFEHFAAREDHAS
LRQLADFVIDNFYPACRNAANPYQALLRDVSLLTADMVAHWQAVGFCHGVMNTDNMSILGLTIDYGPFGFLDAFDANHIC
NHSDQQGRYAYSQQPQVAFWNLHCLAQALLPLWRDANAADPEAEKAAAVEAAREALDPFRDRYAEAFFRHYRAKLGLRSE
QEQDETLMTNLFRVLHENRVDYTSFWRNLSRVSSLDNSHDAAVRDLFLDRAAWDAWAAEYRARLQSEQSDDAARTTAMLA
TNPKYVLRNHMAETAIRAARDKDFSEVDRLMAVLSKPFDEQPEAESYAKLPPDWASGLEVSCSS
>Mature_544_residues
MCTHTGHSAAPSLSGLIDAEPCHFWLPLMPNEPTDVLPPTSFNVPFGTRPGIAALGERFFTRLSPTPLPSPYLVSVAPAA
AALLGWNETDLQDAVKDPAFIDSFVGNAVPDWADPLATVYSGHQFGVWAGQLGDGRAIRLAEAQTPGGPWEIQLKGGGLT
PYSRMADGRAVLRSSIREYLCSEAMYALGVPTTRALSIIGSDAPVRRETIETSAVVTRLAPSFIRFGHFEHFAAREDHAS
LRQLADFVIDNFYPACRNAANPYQALLRDVSLLTADMVAHWQAVGFCHGVMNTDNMSILGLTIDYGPFGFLDAFDANHIC
NHSDQQGRYAYSQQPQVAFWNLHCLAQALLPLWRDANAADPEAEKAAAVEAAREALDPFRDRYAEAFFRHYRAKLGLRSE
QEQDETLMTNLFRVLHENRVDYTSFWRNLSRVSSLDNSHDAAVRDLFLDRAAWDAWAAEYRARLQSEQSDDAARTTAMLA
TNPKYVLRNHMAETAIRAARDKDFSEVDRLMAVLSKPFDEQPEAESYAKLPPDWASGLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=396, Percent_Identity=47.2222222222222, Blast_Score=316, Evalue=3e-86,
Organism=Escherichia coli, GI1787999, Length=496, Percent_Identity=47.9838709677419, Blast_Score=434, Evalue=1e-123,
Organism=Saccharomyces cerevisiae, GI6325034, Length=431, Percent_Identity=35.2668213457077, Blast_Score=226, Evalue=9e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1864_RALME (Q1LM83)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_584012.1
- STRING:   Q1LM83
- GeneID:   4038666
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_1864
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- PhylomeDB:   Q1LM83
- ProtClustDB:   PRK00029
- BioCyc:   RMET266264:RMET_1864-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 60199; Mature: 60199

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTHTGHSAAPSLSGLIDAEPCHFWLPLMPNEPTDVLPPTSFNVPFGTRPGIAALGERFF
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
TRLSPTPLPSPYLVSVAPAAAALLGWNETDLQDAVKDPAFIDSFVGNAVPDWADPLATVY
HHCCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH
SGHQFGVWAGQLGDGRAIRLAEAQTPGGPWEIQLKGGGLTPYSRMADGRAVLRSSIREYL
CCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHCHHHHHHHHHHHHH
CSEAMYALGVPTTRALSIIGSDAPVRRETIETSAVVTRLAPSFIRFGHFEHFAAREDHAS
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHH
LRQLADFVIDNFYPACRNAANPYQALLRDVSLLTADMVAHWQAVGFCHGVMNTDNMSILG
HHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LTIDYGPFGFLDAFDANHICNHSDQQGRYAYSQQPQVAFWNLHCLAQALLPLWRDANAAD
EEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCC
PEAEKAAAVEAAREALDPFRDRYAEAFFRHYRAKLGLRSEQEQDETLMTNLFRVLHENRV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
DYTSFWRNLSRVSSLDNSHDAAVRDLFLDRAAWDAWAAEYRARLQSEQSDDAARTTAMLA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
TNPKYVLRNHMAETAIRAARDKDFSEVDRLMAVLSKPFDEQPEAESYAKLPPDWASGLEV
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHCCCEE
SCSS
ECCC
>Mature Secondary Structure
MCTHTGHSAAPSLSGLIDAEPCHFWLPLMPNEPTDVLPPTSFNVPFGTRPGIAALGERFF
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
TRLSPTPLPSPYLVSVAPAAAALLGWNETDLQDAVKDPAFIDSFVGNAVPDWADPLATVY
HHCCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH
SGHQFGVWAGQLGDGRAIRLAEAQTPGGPWEIQLKGGGLTPYSRMADGRAVLRSSIREYL
CCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHCHHHHHHHHHHHHH
CSEAMYALGVPTTRALSIIGSDAPVRRETIETSAVVTRLAPSFIRFGHFEHFAAREDHAS
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHH
LRQLADFVIDNFYPACRNAANPYQALLRDVSLLTADMVAHWQAVGFCHGVMNTDNMSILG
HHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LTIDYGPFGFLDAFDANHICNHSDQQGRYAYSQQPQVAFWNLHCLAQALLPLWRDANAAD
EEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCC
PEAEKAAAVEAAREALDPFRDRYAEAFFRHYRAKLGLRSEQEQDETLMTNLFRVLHENRV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
DYTSFWRNLSRVSSLDNSHDAAVRDLFLDRAAWDAWAAEYRARLQSEQSDDAARTTAMLA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
TNPKYVLRNHMAETAIRAARDKDFSEVDRLMAVLSKPFDEQPEAESYAKLPPDWASGLEV
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHCCCEE
SCSS
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA