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The map label for this gene is papD [H]

Identifier: 94310603

GI number: 94310603

Start: 1797425

End: 1798252

Strand: Reverse

Name: papD [H]

Synonym: Rmet_1663

Alternate gene names: 94310603

Gene position: 1798252-1797425 (Counterclockwise)

Preceding gene: 94310604

Following gene: 335055540

Centisome position: 45.78

GC content: 46.98

Gene sequence:

>828_bases
ATGTCCCCAATAGGGCGCGACGAACCGAAGATTCGCGCAACTCGAATCAAAAGAATCTGGAATGATTGGCGATTTCCCTC
CGGGTTCCATGCACTTAGATTCGTAATTATCTTCGGTGTGATGATTATGCAGGCGTGGAACCCGCAGGCAATTGCTGGTG
TGACACCAGAAGTCTCTCGGGTTGTTTACGCAGCTGATGCTGCCGAGCAGTCTCTACAAGTATTTAATGTCAACGATTAT
CCAGTTCTTGCTCAGGCCTGGATCGACGACGGCAGGATAGACGCCCTACCACAAGAATCAACCGCGCCGATAGTTGTGAT
TCCGCCAATCTTTCGCTTAGGCCGCGGTGATCAGACAAGTCTCCGATTAATAAACTCTGGAGCCGCGCTTCCGTCAGATC
GTGAGTCATTATTTTGGCTCAACATTTATGAGATACCTTCAACGCCAAATGGCAGCATGGCAGAGAGCCAGTTGGTTACG
GTAACGATGCGAACGCAGATCAAAGTTTTCGTTCGACCCCGTAAGCTTCCCTTTTCATCGGACGAGATCCCAAAGCGCCT
TGCGTTCTCTGTCAAGATCATGACTGATGAATCTCTCTTGGAGATTAGGAATCCAACGCCATATTATGTAACATTTTCTA
AAATTCAGACCGATATCGGGCGAATATCACAAGTCTCATCTGTAGAAATGATCGCGCCTTACTCTCAGACCATCGCCCAT
CTCGGCGAGGTAAAAGGCATCGGTAATTCTGCAAGGATCCGATTCTCTCTAATCGATGATGATGGAAATCCATTTTATGG
AGAACGAAATATTGATATTGAAAATTAG

Upstream 100 bases:

>100_bases
AATGCAACCGCCCAAGTGATCGTCCGGGTCCAGTGACTATGTTACTTATATCTGGACTCAAAGATTAGTAATCACTCCTA
TCTTACAAGGTGTATTAGCG

Downstream 100 bases:

>100_bases
AATGTAATCCGTCGACACCGCCACATTGGACGAAACGATGCCGTAGGATGCGGGGATGAAGAAGGAATCGCTCGGTTCTG
ATAGTCATATAGCCAGTCGC

Product: pili assembly chaperone, PapD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSPIGRDEPKIRATRIKRIWNDWRFPSGFHALRFVIIFGVMIMQAWNPQAIAGVTPEVSRVVYAADAAEQSLQVFNVNDY
PVLAQAWIDDGRIDALPQESTAPIVVIPPIFRLGRGDQTSLRLINSGAALPSDRESLFWLNIYEIPSTPNGSMAESQLVT
VTMRTQIKVFVRPRKLPFSSDEIPKRLAFSVKIMTDESLLEIRNPTPYYVTFSKIQTDIGRISQVSSVEMIAPYSQTIAH
LGEVKGIGNSARIRFSLIDDDGNPFYGERNIDIEN

Sequences:

>Translated_275_residues
MSPIGRDEPKIRATRIKRIWNDWRFPSGFHALRFVIIFGVMIMQAWNPQAIAGVTPEVSRVVYAADAAEQSLQVFNVNDY
PVLAQAWIDDGRIDALPQESTAPIVVIPPIFRLGRGDQTSLRLINSGAALPSDRESLFWLNIYEIPSTPNGSMAESQLVT
VTMRTQIKVFVRPRKLPFSSDEIPKRLAFSVKIMTDESLLEIRNPTPYYVTFSKIQTDIGRISQVSSVEMIAPYSQTIAH
LGEVKGIGNSARIRFSLIDDDGNPFYGERNIDIEN
>Mature_274_residues
SPIGRDEPKIRATRIKRIWNDWRFPSGFHALRFVIIFGVMIMQAWNPQAIAGVTPEVSRVVYAADAAEQSLQVFNVNDYP
VLAQAWIDDGRIDALPQESTAPIVVIPPIFRLGRGDQTSLRLINSGAALPSDRESLFWLNIYEIPSTPNGSMAESQLVTV
TMRTQIKVFVRPRKLPFSSDEIPKRLAFSVKIMTDESLLEIRNPTPYYVTFSKIQTDIGRISQVSSVEMIAPYSQTIAHL
GEVKGIGNSARIRFSLIDDDGNPFYGERNIDIEN

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=242, Percent_Identity=30.5785123966942, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789532, Length=201, Percent_Identity=34.3283582089552, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786936, Length=215, Percent_Identity=29.7674418604651, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790771, Length=239, Percent_Identity=28.0334728033473, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1786743, Length=232, Percent_Identity=27.1551724137931, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788428, Length=247, Percent_Identity=28.7449392712551, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787171, Length=212, Percent_Identity=28.3018867924528, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082203, Length=244, Percent_Identity=26.2295081967213, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788677, Length=164, Percent_Identity=31.7073170731707, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 30897; Mature: 30766

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPIGRDEPKIRATRIKRIWNDWRFPSGFHALRFVIIFGVMIMQAWNPQAIAGVTPEVSR
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHE
VVYAADAAEQSLQVFNVNDYPVLAQAWIDDGRIDALPQESTAPIVVIPPIFRLGRGDQTS
EEEEECCCCCCEEEEECCCCCEEEEEECCCCCEECCCCCCCCCEEEECCHHHCCCCCCCE
LRLINSGAALPSDRESLFWLNIYEIPSTPNGSMAESQLVTVTMRTQIKVFVRPRKLPFSS
EEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCC
DEIPKRLAFSVKIMTDESLLEIRNPTPYYVTFSKIQTDIGRISQVSSVEMIAPYSQTIAH
CCCCCEEEEEEEEEECCHHEEECCCCCEEEEHHHHHHHHHHHHHCCCEEEECCHHHHHHH
LGEVKGIGNSARIRFSLIDDDGNPFYGERNIDIEN
HHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPIGRDEPKIRATRIKRIWNDWRFPSGFHALRFVIIFGVMIMQAWNPQAIAGVTPEVSR
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHE
VVYAADAAEQSLQVFNVNDYPVLAQAWIDDGRIDALPQESTAPIVVIPPIFRLGRGDQTS
EEEEECCCCCCEEEEECCCCCEEEEEECCCCCEECCCCCCCCCEEEECCHHHCCCCCCCE
LRLINSGAALPSDRESLFWLNIYEIPSTPNGSMAESQLVTVTMRTQIKVFVRPRKLPFSS
EEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCC
DEIPKRLAFSVKIMTDESLLEIRNPTPYYVTFSKIQTDIGRISQVSSVEMIAPYSQTIAH
CCCCCEEEEEEEEEECCHHEEECCCCCEEEEHHHHHHHHHHHHHCCCEEEECCHHHHHHH
LGEVKGIGNSARIRFSLIDDDGNPFYGERNIDIEN
HHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]