| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is hypF2 [H]
Identifier: 94310479
GI number: 94310479
Start: 1656930
End: 1659287
Strand: Direct
Name: hypF2 [H]
Synonym: Rmet_1537
Alternate gene names: 94310479
Gene position: 1656930-1659287 (Clockwise)
Preceding gene: 94310478
Following gene: 94310480
Centisome position: 42.18
GC content: 71.16
Gene sequence:
>2358_bases ATGCTGATGCCGCGAACCCAGCGCCAGCCCCGGCCCGTCCGCATCCGCATCCGCGTGCGCGGCGTGGTGCAGGGCGTGGG CTTCCGGCCCTTCGTTTATCGCCTGGCGCAGGAACTGGGCGTCGCCGGCTGGGTGCGCAACGACGGCGCCGGCGTGGACA TCGAGGTCCAGGGGAGCGCCGCGGCCATCGCCGAGCTGCGCGAGCGGCTGCGCCGCGACGCGCCGCCCCTGGCGCGAGTG GATGAGATCGGCGAGGAACGCTGCGCGGTACAAGCCGACGCCGACGGCTTTGCCATCCTCGAGAGCAACCGTTCCGATGC CGCCGTGCACACCGCCATCGGCCACGACACGGCGGTGTGCGCCGACTGCCTGGCGGAGCTTTTCGACCCCGCGGACCGGC GCTACCGTTACGCCTTCATCAACTGCACCCAGTGCGGCCCGCGCTACACGCTGACGCGCGCGCTGCCCTACGACCGCGCC ACCACCAGCATGGCGCCGTTCCCGCAGTGCCCGCCCTGTCTGGGCGAGTACCAAGCGCCGGAGCATCGCCGCTTCCACGC CGAGCCCAACGCCTGTCCGGATTGCGGCCCCAGCTTGATGCTGCTCGATGCGCAGGGCATGCCGGTGCCGGGCGTAGACC CGATTGCCGGAACGGTGGCGCGCGTGCTGCGCGGCGAGATCGTCGCCATCAAGGGCCTGGGCGGCTTCCATCTCGCCTGT GACGCGCGTAATGCCGAGGCGGTGGCGCGGCTGCGCGACCGCAAGCAGCGCGAGGAGAAGCCCTTCGCGGTGATGGTCGC CAACCCGGTGACGGCGGCGCAGTGGGGCGATGTCTGCAGCGGCGCAGAGATCCTGCTCGCGGCGCCGGAGCGCCCCATCG TGCTGCTGCGCAAGCAGCGCATCGTCGACGAGCAGCTGCACGGCGTGGCGCCGGGACTCGCCTGGCTGGGCGTGATGTTG CCCCATACGCCGCTGCAGTACCTGCTGTTCCACGAGGCGGCCGGCCGGCCCGACGGGCTCGCCTGGCTCACGCAGCCGCA GCCGCTGGTGCTGGTGATGACCAGCGCCAACCCCGGCGGCGAGCCGCTGGTCATCCGAAACCATGTGGCGCTGCAACGCC TCGCCGGCATCGCCGATGCCTTCCTCCTTCACGACCGCGAGATCCTGGTGCGCTGTGATGATTCTGTGGTGAGAGCCGAA CCCACCGATCACCCATCGCAGCAATTCATTCGTCGTGCTCGGGGTTACATACCGCGTGCCATCAAGCTCGCCCGCAGCGG TCCGTCGGTGCTGGCGCTGGGCGGCTACTTCAAGAACACCGTGTGCCTGACCCGCGGTGACGAAGCCTTCGTTTCCCAGC ATGTGGGCGATCTCGACAACGCCGCCACCTGTGAGGCGATGATCGAGGCGGTGGCCCATCTGCGGCAGGTGCTGGACATC CAGCCGCGGCTCGTCGCCCACGACCTGCATCCGGAATTCTTCAGCACGCGCCACGGGGCGGAACTGGCGGCGGAATGGGC CGTGCCCGCCGTCGCCGTGCAGCACCATCACGCCCACATCGCTGCGGTGCTGGCCGAGCACCGCTCGGACGGGCCCGCCA TCGGCTTGGCGCTGGACGGCGTCGGCCTGGGCAATGATGGCCAAGCGTGGGGTGGCGAACTGCTGCTGGTGGACGGCGGC TCCTGCAAACGCCTCGGTCACTTGCGCCGGCTGCCGCTGCCCGGCGGCGACCGCGCGGCGCGCGAGCCTTGGCGCATGGC TGCCGCCGCGCTGCACCTGATGGGGCGTGGCGAGGAGATCGCAGAGCGCTTTCCGCAGCAGCCGGGGGCGAAGATGGTGA ACCGCATGCTGGCCCAGCGGTTGAACGCGCCGCTCACTTCCAGCATGGGCCGCTGGTTCGACGCCGCCGCCGGCCTGCTG GGCACGCGCGAGACCATGGCCTACGAGGGCCAGGCGGCGATGCTGCTGGAAGGGCTGGCCGAGCGCTGGGGCGAGGGGCT GGCGCTGCGCGATGCCTGGCGCATCGGCGCGGACAACGTCCTGGATCTGCTGCCGCTGCTGGAGGCGCTGTCCGCCGAAG CAAACCCGGCGCGCGGTGCGGCGCAATTCCATGCTACGCTGGTGGCGGCGCTGGAAGCTTGGGCCGTCGCGGCGGTCCAG GACACCGGCGTGCGCACCGTCGCCTTCGGCGGCGGCTGCTTCCTCAACCACATCCTCGTCCGCAACCTGGGTCGACGCCT GGCGGCACGCGGCCTGACCGTGCTGACGGCGCAGCAGCTGCCGTCCAATGACGGCGGCATCGCCCTCGGTCAGGCCTGGG TGGCGCTGCGGTGGGCGCCTCAACTTATGGAAGAGTAG
Upstream 100 bases:
>100_bases CAGCGCGCCAAGCGCAGCCAGAACGTGGACCTGCTGCGCGCCCGCGTCGCCGAGCTGGAAGCGGAGCTGGCGGTGCTCAA GCGCTGATCGCCGAGCCCGC
Downstream 100 bases:
>100_bases AAACATGTGCCTTGCTATACCCGCACGCATCGCGGAGAAACTCGACAACGACATGGCCCTCATCGACCTGGGCGGCGTGC GCAAGGAGATCTCGCTGGCG
Product: carbamoyl phosphate phosphatase and maturation protein for (NiFe) hydrogenases
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MLMPRTQRQPRPVRIRIRVRGVVQGVGFRPFVYRLAQELGVAGWVRNDGAGVDIEVQGSAAAIAELRERLRRDAPPLARV DEIGEERCAVQADADGFAILESNRSDAAVHTAIGHDTAVCADCLAELFDPADRRYRYAFINCTQCGPRYTLTRALPYDRA TTSMAPFPQCPPCLGEYQAPEHRRFHAEPNACPDCGPSLMLLDAQGMPVPGVDPIAGTVARVLRGEIVAIKGLGGFHLAC DARNAEAVARLRDRKQREEKPFAVMVANPVTAAQWGDVCSGAEILLAAPERPIVLLRKQRIVDEQLHGVAPGLAWLGVML PHTPLQYLLFHEAAGRPDGLAWLTQPQPLVLVMTSANPGGEPLVIRNHVALQRLAGIADAFLLHDREILVRCDDSVVRAE PTDHPSQQFIRRARGYIPRAIKLARSGPSVLALGGYFKNTVCLTRGDEAFVSQHVGDLDNAATCEAMIEAVAHLRQVLDI QPRLVAHDLHPEFFSTRHGAELAAEWAVPAVAVQHHHAHIAAVLAEHRSDGPAIGLALDGVGLGNDGQAWGGELLLVDGG SCKRLGHLRRLPLPGGDRAAREPWRMAAAALHLMGRGEEIAERFPQQPGAKMVNRMLAQRLNAPLTSSMGRWFDAAAGLL GTRETMAYEGQAAMLLEGLAERWGEGLALRDAWRIGADNVLDLLPLLEALSAEANPARGAAQFHATLVAALEAWAVAAVQ DTGVRTVAFGGGCFLNHILVRNLGRRLAARGLTVLTAQQLPSNDGGIALGQAWVALRWAPQLMEE
Sequences:
>Translated_785_residues MLMPRTQRQPRPVRIRIRVRGVVQGVGFRPFVYRLAQELGVAGWVRNDGAGVDIEVQGSAAAIAELRERLRRDAPPLARV DEIGEERCAVQADADGFAILESNRSDAAVHTAIGHDTAVCADCLAELFDPADRRYRYAFINCTQCGPRYTLTRALPYDRA TTSMAPFPQCPPCLGEYQAPEHRRFHAEPNACPDCGPSLMLLDAQGMPVPGVDPIAGTVARVLRGEIVAIKGLGGFHLAC DARNAEAVARLRDRKQREEKPFAVMVANPVTAAQWGDVCSGAEILLAAPERPIVLLRKQRIVDEQLHGVAPGLAWLGVML PHTPLQYLLFHEAAGRPDGLAWLTQPQPLVLVMTSANPGGEPLVIRNHVALQRLAGIADAFLLHDREILVRCDDSVVRAE PTDHPSQQFIRRARGYIPRAIKLARSGPSVLALGGYFKNTVCLTRGDEAFVSQHVGDLDNAATCEAMIEAVAHLRQVLDI QPRLVAHDLHPEFFSTRHGAELAAEWAVPAVAVQHHHAHIAAVLAEHRSDGPAIGLALDGVGLGNDGQAWGGELLLVDGG SCKRLGHLRRLPLPGGDRAAREPWRMAAAALHLMGRGEEIAERFPQQPGAKMVNRMLAQRLNAPLTSSMGRWFDAAAGLL GTRETMAYEGQAAMLLEGLAERWGEGLALRDAWRIGADNVLDLLPLLEALSAEANPARGAAQFHATLVAALEAWAVAAVQ DTGVRTVAFGGGCFLNHILVRNLGRRLAARGLTVLTAQQLPSNDGGIALGQAWVALRWAPQLMEE >Mature_785_residues MLMPRTQRQPRPVRIRIRVRGVVQGVGFRPFVYRLAQELGVAGWVRNDGAGVDIEVQGSAAAIAELRERLRRDAPPLARV DEIGEERCAVQADADGFAILESNRSDAAVHTAIGHDTAVCADCLAELFDPADRRYRYAFINCTQCGPRYTLTRALPYDRA TTSMAPFPQCPPCLGEYQAPEHRRFHAEPNACPDCGPSLMLLDAQGMPVPGVDPIAGTVARVLRGEIVAIKGLGGFHLAC DARNAEAVARLRDRKQREEKPFAVMVANPVTAAQWGDVCSGAEILLAAPERPIVLLRKQRIVDEQLHGVAPGLAWLGVML PHTPLQYLLFHEAAGRPDGLAWLTQPQPLVLVMTSANPGGEPLVIRNHVALQRLAGIADAFLLHDREILVRCDDSVVRAE PTDHPSQQFIRRARGYIPRAIKLARSGPSVLALGGYFKNTVCLTRGDEAFVSQHVGDLDNAATCEAMIEAVAHLRQVLDI QPRLVAHDLHPEFFSTRHGAELAAEWAVPAVAVQHHHAHIAAVLAEHRSDGPAIGLALDGVGLGNDGQAWGGELLLVDGG SCKRLGHLRRLPLPGGDRAAREPWRMAAAALHLMGRGEEIAERFPQQPGAKMVNRMLAQRLNAPLTSSMGRWFDAAAGLL GTRETMAYEGQAAMLLEGLAERWGEGLALRDAWRIGADNVLDLLPLLEALSAEANPARGAAQFHATLVAALEAWAVAAVQ DTGVRTVAFGGGCFLNHILVRNLGRRLAARGLTVLTAQQLPSNDGGIALGQAWVALRWAPQLMEE
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=775, Percent_Identity=42.3225806451613, Blast_Score=468, Evalue=1e-133,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 84887; Mature: 84887
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMPRTQRQPRPVRIRIRVRGVVQGVGFRPFVYRLAQELGVAGWVRNDGAGVDIEVQGSA CCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEECCCH AAIAELRERLRRDAPPLARVDEIGEERCAVQADADGFAILESNRSDAAVHTAIGHDTAVC HHHHHHHHHHHHCCCCHHHHHHHCHHHEEEEECCCCEEEEECCCCCCEEEEECCCCHHHH ADCLAELFDPADRRYRYAFINCTQCGPRYTLTRALPYDRATTSMAPFPQCPPCLGEYQAP HHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC EHRRFHAEPNACPDCGPSLMLLDAQGMPVPGVDPIAGTVARVLRGEIVAIKGLGGFHLAC CCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEE DARNAEAVARLRDRKQREEKPFAVMVANPVTAAQWGDVCSGAEILLAAPERPIVLLRKQR CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCEEEEECCCCCEEEHHHHH IVDEQLHGVAPGLAWLGVMLPHTPLQYLLFHEAAGRPDGLAWLTQPQPLVLVMTSANPGG HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCC EPLVIRNHVALQRLAGIADAFLLHDREILVRCDDSVVRAEPTDHPSQQFIRRARGYIPRA CEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCHHHHHHHHHHCCCCHH IKLARSGPSVLALGGYFKNTVCLTRGDEAFVSQHVGDLDNAATCEAMIEAVAHLRQVLDI HHHHCCCCCEEEECCCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC QPRLVAHDLHPEFFSTRHGAELAAEWAVPAVAVQHHHAHIAAVLAEHRSDGPAIGLALDG CCHHHHHHCCHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC VGLGNDGQAWGGELLLVDGGSCKRLGHLRRLPLPGGDRAAREPWRMAAAALHLMGRGEEI CCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHH AERFPQQPGAKMVNRMLAQRLNAPLTSSMGRWFDAAAGLLGTRETMAYEGQAAMLLEGLA HHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHEECCCHHHHHHHHH ERWGEGLALRDAWRIGADNVLDLLPLLEALSAEANPARGAAQFHATLVAALEAWAVAAVQ HHHCCCCEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEC DTGVRTVAFGGGCFLNHILVRNLGRRLAARGLTVLTAQQLPSNDGGIALGQAWVALRWAP CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEEHHHHHHHHHCCH QLMEE HHHCC >Mature Secondary Structure MLMPRTQRQPRPVRIRIRVRGVVQGVGFRPFVYRLAQELGVAGWVRNDGAGVDIEVQGSA CCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEECCCH AAIAELRERLRRDAPPLARVDEIGEERCAVQADADGFAILESNRSDAAVHTAIGHDTAVC HHHHHHHHHHHHCCCCHHHHHHHCHHHEEEEECCCCEEEEECCCCCCEEEEECCCCHHHH ADCLAELFDPADRRYRYAFINCTQCGPRYTLTRALPYDRATTSMAPFPQCPPCLGEYQAP HHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC EHRRFHAEPNACPDCGPSLMLLDAQGMPVPGVDPIAGTVARVLRGEIVAIKGLGGFHLAC CCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEE DARNAEAVARLRDRKQREEKPFAVMVANPVTAAQWGDVCSGAEILLAAPERPIVLLRKQR CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCEEEEECCCCCEEEHHHHH IVDEQLHGVAPGLAWLGVMLPHTPLQYLLFHEAAGRPDGLAWLTQPQPLVLVMTSANPGG HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCC EPLVIRNHVALQRLAGIADAFLLHDREILVRCDDSVVRAEPTDHPSQQFIRRARGYIPRA CEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCHHHHHHHHHHCCCCHH IKLARSGPSVLALGGYFKNTVCLTRGDEAFVSQHVGDLDNAATCEAMIEAVAHLRQVLDI HHHHCCCCCEEEECCCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC QPRLVAHDLHPEFFSTRHGAELAAEWAVPAVAVQHHHAHIAAVLAEHRSDGPAIGLALDG CCHHHHHHCCHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC VGLGNDGQAWGGELLLVDGGSCKRLGHLRRLPLPGGDRAAREPWRMAAAALHLMGRGEEI CCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHH AERFPQQPGAKMVNRMLAQRLNAPLTSSMGRWFDAAAGLLGTRETMAYEGQAAMLLEGLA HHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHEECCCHHHHHHHHH ERWGEGLALRDAWRIGADNVLDLLPLLEALSAEANPARGAAQFHATLVAALEAWAVAAVQ HHHCCCCEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEC DTGVRTVAFGGGCFLNHILVRNLGRRLAARGLTVLTAQQLPSNDGGIALGQAWVALRWAP CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEEHHHHHHHHHCCH QLMEE HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]