Click here to switch to the map view.

The map label for this gene is hypD1 [H]

Identifier: 94310226

GI number: 94310226

Start: 1402286

End: 1403449

Strand: Reverse

Name: hypD1 [H]

Synonym: Rmet_1282

Alternate gene names: 94310226

Gene position: 1403449-1402286 (Counterclockwise)

Preceding gene: 94310227

Following gene: 94310225

Centisome position: 35.73

GC content: 68.21

Gene sequence:

>1164_bases
ATGAAATTCATCGACGAGTTCCGCGATGGCGAACTGGCCAAACAGATCGGCGAACGCATCCATGCCGAGGCACGCAGCGA
CCGCGCCTACAGCTTCATGGAGTTCTGCGGCGGCCACACCCACGCCATCAGCCGCTACGGCGTGCTCGAGCTGCTGCCGT
CCAACGTGCGCATGGTCCACGGCCCGGGCTGCCCGGTCTGCGTGCTGCCCATCGGCCGCATCGATCTGGCGATCCGCCTG
GCGCTGGAGCGCGACGCCATCGTCTGCACCTACGGCGACACCATGCGCGTGCCGGCCAGCGACAGCCTTTCATTGATGAA
GGCCAAGGCGCGCGGCGGCGACATCCGCATGGTCTATTCGGCCGCCGACGCGCTGGCCATCGCGCGTGCGAACCCGCAGC
GCGAGGTCGTGTTCTTCGCCATCGGCTTCGAGACCACCACGCCACCCACGGCACTGGCCATCCGCGATGCGCAGCGCGAG
GGCCTGAGCAACTTCAGCGTGCTGTGCTGCCACGTGCTCACGCCCTCGGCCATCACCCACATCCTCGAATCGCCCGAGGT
GCGCCAGTTCGGCACGGTGCCCATCGACGGCTTCGTCGGCCCCGCCCACGTGAGCATCGTGATCGGCAGCCAGCCCTACG
AACACTTCGCCGAGGAGTACCGCAAGCCGGTGGTGATTGCGGGCTTCGAGCCGCTGGACGTGATGCAGGCCATCCTGATG
CTGGTGCGCCAGGTCAACCGCGGCGCCGCCCATGTCGAGAACGAGTTCACCCGCGCCGTCACGCCCGAGGGCAACCTGCG
CGCCCAGGCCCTGGTGTCCGAGGTGTTCGAGTTGCGGCCCAGCTTCGAGTGGCGTGGCCTGGGCGAGGTGCCCTACAGCG
CGCTCAAGATCCGCGAGGCCTTCGCGGCCTTCGACGCCGAGCGCCGCTTCGACCTGGCCTACCAGTCGGTGCCCGACAAC
AAGGCCTGCGAGTGCGGTGCCATCCTGCGCGGCGTGAAACGGCCGACGGACTGCAAGATCTTTGGCACCGTCTGCACACC
CGAGAACCCGGTCGGCTCCTGCATGGTGTCCAGCGAAGGCGCCTGCGCCGCGCACTACACCTATGGCCGCTTCCGCGACA
TCCCCATCGTCGCCGCCACCGCCACCGAGGAGGTCACCCCATGA

Upstream 100 bases:

>100_bases
ACGTGGGCCACGCCATCGGCATGATCGACCCCGAGGAGGCCGAGAAGACCCTCGCGCTGTTTGCCGAGATGCAGGCCATG
ACCGGCGCGTAGGTGCAGCC

Downstream 100 bases:

>100_bases
GAACCGAACACCACCAGGCCGGCGCTGGCGAGGCCCCCGCCCCCAAGCCCGTGAAGAAAAACTACATCCGCCCGCTCGAC
ATCAAACACGGCCGCATCGA

Product: hydrogenase isoenzymes formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKFIDEFRDGELAKQIGERIHAEARSDRAYSFMEFCGGHTHAISRYGVLELLPSNVRMVHGPGCPVCVLPIGRIDLAIRL
ALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDIRMVYSAADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQRE
GLSNFSVLCCHVLTPSAITHILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVMQAILM
LVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSALKIREAFAAFDAERRFDLAYQSVPDN
KACECGAILRGVKRPTDCKIFGTVCTPENPVGSCMVSSEGACAAHYTYGRFRDIPIVAATATEEVTP

Sequences:

>Translated_387_residues
MKFIDEFRDGELAKQIGERIHAEARSDRAYSFMEFCGGHTHAISRYGVLELLPSNVRMVHGPGCPVCVLPIGRIDLAIRL
ALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDIRMVYSAADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQRE
GLSNFSVLCCHVLTPSAITHILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVMQAILM
LVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSALKIREAFAAFDAERRFDLAYQSVPDN
KACECGAILRGVKRPTDCKIFGTVCTPENPVGSCMVSSEGACAAHYTYGRFRDIPIVAATATEEVTP
>Mature_387_residues
MKFIDEFRDGELAKQIGERIHAEARSDRAYSFMEFCGGHTHAISRYGVLELLPSNVRMVHGPGCPVCVLPIGRIDLAIRL
ALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDIRMVYSAADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQRE
GLSNFSVLCCHVLTPSAITHILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVMQAILM
LVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSALKIREAFAAFDAERRFDLAYQSVPDN
KACECGAILRGVKRPTDCKIFGTVCTPENPVGSCMVSSEGACAAHYTYGRFRDIPIVAATATEEVTP

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=373, Percent_Identity=44.7721179624665, Blast_Score=342, Evalue=4e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 42366; Mature: 42366

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIDEFRDGELAKQIGERIHAEARSDRAYSFMEFCGGHTHAISRYGVLELLPSNVRMVH
CCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCHHEECCCCCEEEE
GPGCPVCVLPIGRIDLAIRLALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDIRMVYS
CCCCCEEEEECCCEEEEEEEEECCCEEEEECCCEEECCCCCCHHHHHHHCCCCCEEEEEE
AADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQREGLSNFSVLCCHVLTPSAITH
CCCHHEEECCCCCCEEEEEEEECCCCCCCCEEEEECHHHCCCCCHHHHHHHHHCHHHHHH
ILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVMQAILM
HHCCCCCHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEECCCHHHHHHHHHH
LVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSALKIREA
HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
FAAFDAERRFDLAYQSVPDNKACECGAILRGVKRPTDCKIFGTVCTPENPVGSCMVSSEG
HHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCC
ACAAHYTYGRFRDIPIVAATATEEVTP
CEEEEECCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKFIDEFRDGELAKQIGERIHAEARSDRAYSFMEFCGGHTHAISRYGVLELLPSNVRMVH
CCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCHHEECCCCCEEEE
GPGCPVCVLPIGRIDLAIRLALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDIRMVYS
CCCCCEEEEECCCEEEEEEEEECCCEEEEECCCEEECCCCCCHHHHHHHCCCCCEEEEEE
AADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQREGLSNFSVLCCHVLTPSAITH
CCCHHEEECCCCCCEEEEEEEECCCCCCCCEEEEECHHHCCCCCHHHHHHHHHCHHHHHH
ILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVMQAILM
HHCCCCCHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEECCCHHHHHHHHHH
LVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSALKIREA
HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
FAAFDAERRFDLAYQSVPDNKACECGAILRGVKRPTDCKIFGTVCTPENPVGSCMVSSEG
HHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCC
ACAAHYTYGRFRDIPIVAATATEEVTP
CEEEEECCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]