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The map label for this gene is int [H]

Identifier: 94310181

GI number: 94310181

Start: 1359445

End: 1360644

Strand: Direct

Name: int [H]

Synonym: Rmet_1236

Alternate gene names: 94310181

Gene position: 1359445-1360644 (Clockwise)

Preceding gene: 94310180

Following gene: 94310182

Centisome position: 34.61

GC content: 65.83

Gene sequence:

>1200_bases
ATGGCAAAGATCAAGCTCACCAAGACCGCCGTGGAGGCGGCCCAGCCCCAGGCCAAGGATGTTGAACTGCGGGATACCGT
GGTGCCCGGCTTCCTGTGCAAGATTACCCCGACGGGCCGCCGGGTGTTCATGCTCCAGTACCGCACGAACTCCGGCCAGC
CCCGCAAGCCCTCGCTGGGGCTATACGGGGAGCTGACCGTCGAACAGGCACGAGTCAAGGCACAGGACTGGCTGGCCGAG
GTTCGCCGGGGCGGCGACCCCGGCGGCGCCAAGGCCGAGGCGCGCAAGGCGCCCACGATGGCCGAGTTGTGCAAGAAGTT
CATGGAGGACTACTCCAAGAAGCGCAACAAGCCCAGCACGCAGGACGGCTATCAGGGCGTCATCGACCGCAACATCATCC
CGCTGCTGGGCCGCAAGAAGGTGCATGACGTGAAGCGGCCCGACATTGCCGGGCTGATGGAGAAGCTGGCCTACAAGCCG
ACCGAGGCGAACAAGACCTTCGGCGTGCTGCGCAAGATGTTCAACCTGGCCGAAGTGTGGGGCTACCGCCCGGACGGCAC
GAATCCGTGCCGCCACGTCCCGATGTACCCGCCGGGCAAGGAAACCCGGCTCATCGTGGACGAGGAAATGGTGCGGATCT
TCCGTCATCTGGAGAAGCTGGAGGCGGAAGGGCTGGAGAACTACGTCATCCCGCTGGCGATCCGGCTGCAATTCGAGTTT
GCCGCCCGGCGCTCCGAAATCTGCCCGCTCGAATGGAGCTGGCTGGACTTCGAGAACCGGCGCGTGGTGTGGCCCGACAG
CAAGGTCGGCGGCATTTCCAAGCCCATGAGCGAGGAAGCCTATCGGCTGCTTTCGACGGCGCCGCGCCGGGAGGGCTGCC
CCTATGTCCTGCCATCGCCCAACGACTCGACCAAGCACCTGACCTTTGGCGAGCACTATGGCGGCTGGTGCCGGGTGCTC
AAGGCCGCCGGCGTCCCGCACGTCGGCACGCACGGCATCCGCCATCGCTCGACCACCGACATAGCCAATTCCGGCGTGCC
GACCAAAGTGGGCATGAAGTTAACGGGCCACAAGACTGTGGCGATGTTCATGCACTACGTCCACACCGAGGACAAGCCGG
TGCGCGATGCGGCCGAGCTGGTGGCCAGCCGGCGCCAGGCCATCACGGGCGCGCGCCAGCTTGCGGAGGCGGCAGCATGA

Upstream 100 bases:

>100_bases
CGCGTCCATCATATGCCGGTGCTTTCTGAAACTTGACCCGGTTTTCCCTCGTGCCGCTCCTATCTGGCTCTTGGAATCCG
GGTCGTTCCAAGGAGTCATC

Downstream 100 bases:

>100_bases
ACACGCGCCGGTCATCCGCAGCGTCGTCCGCAGCGTCGTCCGCAGCGCCTTCGGCGCTGCTGGGCGACATTCGGGCACTG
ATCGAGGCGGCGCGCAAGCG

Product: tyrosine-based site-specific recombinase CMGI-2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MAKIKLTKTAVEAAQPQAKDVELRDTVVPGFLCKITPTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAE
VRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLLGRKKVHDVKRPDIAGLMEKLAYKP
TEANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMYPPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEF
AARRSEICPLEWSWLDFENRRVVWPDSKVGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGEHYGGWCRVL
KAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAITGARQLAEAAA

Sequences:

>Translated_399_residues
MAKIKLTKTAVEAAQPQAKDVELRDTVVPGFLCKITPTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAE
VRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLLGRKKVHDVKRPDIAGLMEKLAYKP
TEANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMYPPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEF
AARRSEICPLEWSWLDFENRRVVWPDSKVGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGEHYGGWCRVL
KAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAITGARQLAEAAA
>Mature_398_residues
AKIKLTKTAVEAAQPQAKDVELRDTVVPGFLCKITPTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAEV
RRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLLGRKKVHDVKRPDIAGLMEKLAYKPT
EANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMYPPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEFA
ARRSEICPLEWSWLDFENRRVVWPDSKVGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGEHYGGWCRVLK
AAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAITGARQLAEAAA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=360, Percent_Identity=23.8888888888889, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44811; Mature: 44680

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIKLTKTAVEAAQPQAKDVELRDTVVPGFLCKITPTGRRVFMLQYRTNSGQPRKPSLG
CCEEEEHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
LYGELTVEQARVKAQDWLAEVRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPST
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCC
QDGYQGVIDRNIIPLLGRKKVHDVKRPDIAGLMEKLAYKPTEANKTFGVLRKMFNLAEVW
CCCHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
GYRPDGTNPCRHVPMYPPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEF
CCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEHH
AARRSEICPLEWSWLDFENRRVVWPDSKVGGISKPMSEEAYRLLSTAPRREGCPYVLPSP
HHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCC
NDSTKHLTFGEHYGGWCRVLKAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTV
CCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEECCCHHH
AMFMHYVHTEDKPVRDAAELVASRRQAITGARQLAEAAA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKIKLTKTAVEAAQPQAKDVELRDTVVPGFLCKITPTGRRVFMLQYRTNSGQPRKPSLG
CEEEEHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
LYGELTVEQARVKAQDWLAEVRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPST
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCC
QDGYQGVIDRNIIPLLGRKKVHDVKRPDIAGLMEKLAYKPTEANKTFGVLRKMFNLAEVW
CCCHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
GYRPDGTNPCRHVPMYPPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEF
CCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEHH
AARRSEICPLEWSWLDFENRRVVWPDSKVGGISKPMSEEAYRLLSTAPRREGCPYVLPSP
HHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCC
NDSTKHLTFGEHYGGWCRVLKAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTV
CCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEECCCHHH
AMFMHYVHTEDKPVRDAAELVASRRQAITGARQLAEAAA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]