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The map label for this gene is yoaA [H]

Identifier: 94310180

GI number: 94310180

Start: 1356779

End: 1359010

Strand: Direct

Name: yoaA [H]

Synonym: Rmet_1235

Alternate gene names: 94310180

Gene position: 1356779-1359010 (Clockwise)

Preceding gene: 94310179

Following gene: 94310181

Centisome position: 34.54

GC content: 65.14

Gene sequence:

>2232_bases
GTGCGCGACCAATCGCGCCACGCCTCAGGAAGTTCCAACTTGTCCGAACCGATCGAAGACACATCCTTATCCGACGGCCC
CAATGTGGCCGGAGCCGCCGACATGCCGGAGTCGCTCGCGAACGCCGTTGCCGCGGCGGCAGCCGACCAGGCCGCGCTAA
GGTCTTCGCAACTCGCTACGATCTTTGCCGAAACCGGCACGCTGGCCAGTGCGATCCCCGGCTACCGGCCGCGCGCGGCG
CAGGAGAAGATGTCCGAGGCCGTGGCCAATGCGATCGCCGACAACGACACGGTGATCGTCGAGGCTGGCACGGGTACGGG
CAAGACGTACGCCTATCTGGTGCCGGCCATGCTCTGGGGCGGGAAGGTCATCCTTTCGACCGGTACCAAGAACCTGCAGG
ACCAGCTTTACCTCCGCGACATTCCGACGGTACGCCATGCGCTGAACGTGCCGATCTCCGTCTCCCTGCTCAAGGGGCGG
GCCAACTACGTTTGCCACTATCACCTGGAGCGGGCACAGGCCAACGGCCGGCTGGCGTCGAAGCAGGATGCGGCCTGGTT
GCGCGAGATCAGCCGATTCGCCAAGACCACGACGTCCGGGGACAAGGCCGAGCTGGCCGAAGTACCCGAGAACGCGCCAG
TGTGGCAGCTCGTGACGTCCACACGGGACAACTGCCTGGGCAGCGAATGTCCGAACTACAAGGAATGCTTCGTGATGCGC
GCCCGCAAGGAGGCGCAGCAGGCCGACCTTGTGGTCGTCAACCATCACTTGTTCTTTGCCGACGTTGTGCTGCGCGATAC
CGGCATGGCCGAATTGCTGCCCGCCGCCAACACAGTGATCTTCGACGAAGCGCACCAGTTGCCCGAGACGGCGACGTTGT
TCTTCGGCGAAACGTTGTCGACGAGCCAACTGCTCGAGCTGGCCCGTGATACCGTGGCCGAAGGGCTGTCGCACGCGCGC
GATGCGGTGGACTGGGTCGCGCTTGGGGCACCGCTCGAACGGGCTGCCCGCGATCTGCGCCTGGCTTTCGGCAGGGAGAA
CGCCCGCCTTGCGCTGGGGCAGATCGACGCCGACCCGCGCATTCGCGAGCCGTTTCACGAAACGCTCGACGCGCTCGACA
CGGCGCTGTCCGACTTTGTCGAGGCACTGGAATCGCAGGCCGAGCGTGCCGAGGAGCTTGAACAGTGCCATCGCCGCGCG
CTCGAACTCGCCCAGCGGCTGGCGGCATGGCGCGACGACCGGATTGCCGCATCCCCGGTGCCTGCGGCCGAGCCGGCCGA
CGATGCGGAAGGCGACCAGACTTCCCAGTCTGTCCAACCTGCCCAGCTTGGCCCCGAAACCGTACGCTGGGTGGAAGTGT
TCTCGCACACGGTGCAGTTGCATCGGACGCCGTTGTCGATCGCGCCAATCTTCAGCCGGCAACGCGCAGGCCAACCACGC
GCGTGGGTCTTCACCTCTGCCACGCTGTCCGTGAAGGGCAACTTCACCCATTACGCCGCGCAGCTTGGGCTGGATCGCGA
TCGGTCGTTGACACTGCCGAGCCCGTTTGACTATGCGAAACAGGGGCTGCTGTATGTGCCCCGGGATATGCCACCGCCGC
AATCGCCTCAATTTACCGAGGCGGTGGTGGAGCGGGCGCTGCCGTTGATCGAGGCGGCAGGTGGTCGCACGTTCCTGCTT
TGCACCACGTTGCGGGCGGTGCAGAAGGCGTCGGACATGCTCTATGACCTGTTCGCTGAGCGTGGTATCAACCTGCCGCT
GCTCGTGCAGGGCCAGGCGAGCCGTACCGAATTGCTCGACCGCTTCCGCGAGCTTGGCAATGCCGTGCTGGTGGGCAGCC
AGAGTTTCTGGGAAGGCGTTGATGTCCGTGGCGAGGCGCTGTCGCTGGTCATCATCGACAAGCTGCCGTTCGCACCGCCC
GATGATCCAGTGCTGGCAGCGCGCATGGAAGTACTGCAGAAGAAGGGGCTCAGCCCGTTCGCGGTTCACCAGCTTCCGCA
TGCGGTGATCACGCTGAAGCAGGGTGCTGGCCGACTGATCCGGTCTGAGACCGATCGCGGCGTGCTGGCGATTTGCGATA
CCCGGCTCGTGGAAAAGCCGTATGGCCGGCAGATCTGGCAGAGTCTTCCGCCGTTCACGCGCACGCGAGAAGCCGACACC
GTCATTCGGTTCCTGGAAGGGTTGGGGCGAGGTGAGGCACCGGCGTCCGAGTCCGACACGGATTCGGAGTAG

Upstream 100 bases:

>100_bases
AAGCTCAAGGACGCCATCACCCTGTTGCAAGTGCAGGTCGAGCCCGACGTACCCGCCTAGCATAGATATCCACCGGTCCC
TCCGGCGCCATGACAAAAGC

Downstream 100 bases:

>100_bases
CTGTCCCAGTTTGTACCAGGCAACCACGAGTTCGTAGCATCTGCCCGCCGGGGATGGTCTTCCCGCACCAGACTTACTCG
ATCGGCAGCGGCTACGAGAT

Product: putative ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 743

Protein sequence:

>743_residues
MRDQSRHASGSSNLSEPIEDTSLSDGPNVAGAADMPESLANAVAAAAADQAALRSSQLATIFAETGTLASAIPGYRPRAA
QEKMSEAVANAIADNDTVIVEAGTGTGKTYAYLVPAMLWGGKVILSTGTKNLQDQLYLRDIPTVRHALNVPISVSLLKGR
ANYVCHYHLERAQANGRLASKQDAAWLREISRFAKTTTSGDKAELAEVPENAPVWQLVTSTRDNCLGSECPNYKECFVMR
ARKEAQQADLVVVNHHLFFADVVLRDTGMAELLPAANTVIFDEAHQLPETATLFFGETLSTSQLLELARDTVAEGLSHAR
DAVDWVALGAPLERAARDLRLAFGRENARLALGQIDADPRIREPFHETLDALDTALSDFVEALESQAERAEELEQCHRRA
LELAQRLAAWRDDRIAASPVPAAEPADDAEGDQTSQSVQPAQLGPETVRWVEVFSHTVQLHRTPLSIAPIFSRQRAGQPR
AWVFTSATLSVKGNFTHYAAQLGLDRDRSLTLPSPFDYAKQGLLYVPRDMPPPQSPQFTEAVVERALPLIEAAGGRTFLL
CTTLRAVQKASDMLYDLFAERGINLPLLVQGQASRTELLDRFRELGNAVLVGSQSFWEGVDVRGEALSLVIIDKLPFAPP
DDPVLAARMEVLQKKGLSPFAVHQLPHAVITLKQGAGRLIRSETDRGVLAICDTRLVEKPYGRQIWQSLPPFTRTREADT
VIRFLEGLGRGEAPASESDTDSE

Sequences:

>Translated_743_residues
MRDQSRHASGSSNLSEPIEDTSLSDGPNVAGAADMPESLANAVAAAAADQAALRSSQLATIFAETGTLASAIPGYRPRAA
QEKMSEAVANAIADNDTVIVEAGTGTGKTYAYLVPAMLWGGKVILSTGTKNLQDQLYLRDIPTVRHALNVPISVSLLKGR
ANYVCHYHLERAQANGRLASKQDAAWLREISRFAKTTTSGDKAELAEVPENAPVWQLVTSTRDNCLGSECPNYKECFVMR
ARKEAQQADLVVVNHHLFFADVVLRDTGMAELLPAANTVIFDEAHQLPETATLFFGETLSTSQLLELARDTVAEGLSHAR
DAVDWVALGAPLERAARDLRLAFGRENARLALGQIDADPRIREPFHETLDALDTALSDFVEALESQAERAEELEQCHRRA
LELAQRLAAWRDDRIAASPVPAAEPADDAEGDQTSQSVQPAQLGPETVRWVEVFSHTVQLHRTPLSIAPIFSRQRAGQPR
AWVFTSATLSVKGNFTHYAAQLGLDRDRSLTLPSPFDYAKQGLLYVPRDMPPPQSPQFTEAVVERALPLIEAAGGRTFLL
CTTLRAVQKASDMLYDLFAERGINLPLLVQGQASRTELLDRFRELGNAVLVGSQSFWEGVDVRGEALSLVIIDKLPFAPP
DDPVLAARMEVLQKKGLSPFAVHQLPHAVITLKQGAGRLIRSETDRGVLAICDTRLVEKPYGRQIWQSLPPFTRTREADT
VIRFLEGLGRGEAPASESDTDSE
>Mature_743_residues
MRDQSRHASGSSNLSEPIEDTSLSDGPNVAGAADMPESLANAVAAAAADQAALRSSQLATIFAETGTLASAIPGYRPRAA
QEKMSEAVANAIADNDTVIVEAGTGTGKTYAYLVPAMLWGGKVILSTGTKNLQDQLYLRDIPTVRHALNVPISVSLLKGR
ANYVCHYHLERAQANGRLASKQDAAWLREISRFAKTTTSGDKAELAEVPENAPVWQLVTSTRDNCLGSECPNYKECFVMR
ARKEAQQADLVVVNHHLFFADVVLRDTGMAELLPAANTVIFDEAHQLPETATLFFGETLSTSQLLELARDTVAEGLSHAR
DAVDWVALGAPLERAARDLRLAFGRENARLALGQIDADPRIREPFHETLDALDTALSDFVEALESQAERAEELEQCHRRA
LELAQRLAAWRDDRIAASPVPAAEPADDAEGDQTSQSVQPAQLGPETVRWVEVFSHTVQLHRTPLSIAPIFSRQRAGQPR
AWVFTSATLSVKGNFTHYAAQLGLDRDRSLTLPSPFDYAKQGLLYVPRDMPPPQSPQFTEAVVERALPLIEAAGGRTFLL
CTTLRAVQKASDMLYDLFAERGINLPLLVQGQASRTELLDRFRELGNAVLVGSQSFWEGVDVRGEALSLVIIDKLPFAPP
DDPVLAARMEVLQKKGLSPFAVHQLPHAVITLKQGAGRLIRSETDRGVLAICDTRLVEKPYGRQIWQSLPPFTRTREADT
VIRFLEGLGRGEAPASESDTDSE

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=670, Percent_Identity=45.3731343283582, Blast_Score=536, Evalue=1e-153,
Organism=Escherichia coli, GI1787018, Length=241, Percent_Identity=36.0995850622407, Blast_Score=119, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 81046; Mature: 81046

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDQSRHASGSSNLSEPIEDTSLSDGPNVAGAADMPESLANAVAAAAADQAALRSSQLAT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHE
IFAETGTLASAIPGYRPRAAQEKMSEAVANAIADNDTVIVEAGTGTGKTYAYLVPAMLWG
EEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
GKVILSTGTKNLQDQLYLRDIPTVRHALNVPISVSLLKGRANYVCHYHLERAQANGRLAS
CEEEEECCCCCHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHCCCCCCC
KQDAAWLREISRFAKTTTSGDKAELAEVPENAPVWQLVTSTRDNCLGSECPNYKECFVMR
HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCCHHHHHHHH
ARKEAQQADLVVVNHHLFFADVVLRDTGMAELLPAANTVIFDEAHQLPETATLFFGETLS
HHHHHHHCCEEEEECHHHHHHHHHHCCCHHHHHCCCCEEEEHHHHCCCCCEEEEECCCCC
TSQLLELARDTVAEGLSHARDAVDWVALGAPLERAARDLRLAFGRENARLALGQIDADPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC
IREPFHETLDALDTALSDFVEALESQAERAEELEQCHRRALELAQRLAAWRDDRIAASPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PAAEPADDAEGDQTSQSVQPAQLGPETVRWVEVFSHTVQLHRTPLSIAPIFSRQRAGQPR
CCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
AWVFTSATLSVKGNFTHYAAQLGLDRDRSLTLPSPFDYAKQGLLYVPRDMPPPQSPQFTE
EEEEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCCCHHH
AVVERALPLIEAAGGRTFLLCTTLRAVQKASDMLYDLFAERGINLPLLVQGQASRTELLD
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
RFRELGNAVLVGSQSFWEGVDVRGEALSLVIIDKLPFAPPDDPVLAARMEVLQKKGLSPF
HHHHHCCEEEECCHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCH
AVHQLPHAVITLKQGAGRLIRSETDRGVLAICDTRLVEKPYGRQIWQSLPPFTRTREADT
HHHHCCHHEEEEECCCCHHHHCCCCCCEEEEECHHHHCCCCHHHHHHHCCCCCCCCHHHH
VIRFLEGLGRGEAPASESDTDSE
HHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDQSRHASGSSNLSEPIEDTSLSDGPNVAGAADMPESLANAVAAAAADQAALRSSQLAT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHE
IFAETGTLASAIPGYRPRAAQEKMSEAVANAIADNDTVIVEAGTGTGKTYAYLVPAMLWG
EEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
GKVILSTGTKNLQDQLYLRDIPTVRHALNVPISVSLLKGRANYVCHYHLERAQANGRLAS
CEEEEECCCCCHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHCCCCCCC
KQDAAWLREISRFAKTTTSGDKAELAEVPENAPVWQLVTSTRDNCLGSECPNYKECFVMR
HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCCHHHHHHHH
ARKEAQQADLVVVNHHLFFADVVLRDTGMAELLPAANTVIFDEAHQLPETATLFFGETLS
HHHHHHHCCEEEEECHHHHHHHHHHCCCHHHHHCCCCEEEEHHHHCCCCCEEEEECCCCC
TSQLLELARDTVAEGLSHARDAVDWVALGAPLERAARDLRLAFGRENARLALGQIDADPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC
IREPFHETLDALDTALSDFVEALESQAERAEELEQCHRRALELAQRLAAWRDDRIAASPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PAAEPADDAEGDQTSQSVQPAQLGPETVRWVEVFSHTVQLHRTPLSIAPIFSRQRAGQPR
CCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
AWVFTSATLSVKGNFTHYAAQLGLDRDRSLTLPSPFDYAKQGLLYVPRDMPPPQSPQFTE
EEEEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCCCHHH
AVVERALPLIEAAGGRTFLLCTTLRAVQKASDMLYDLFAERGINLPLLVQGQASRTELLD
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
RFRELGNAVLVGSQSFWEGVDVRGEALSLVIIDKLPFAPPDDPVLAARMEVLQKKGLSPF
HHHHHCCEEEECCHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCH
AVHQLPHAVITLKQGAGRLIRSETDRGVLAICDTRLVEKPYGRQIWQSLPPFTRTREADT
HHHHCCHHEEEEECCCCHHHHCCCCCCEEEEECHHHHCCCCHHHHHHHCCCCCCCCHHHH
VIRFLEGLGRGEAPASESDTDSE
HHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]