Click here to switch to the map view.

The map label for this gene is 94309922

Identifier: 94309922

GI number: 94309922

Start: 1063220

End: 1063759

Strand: Reverse

Name: 94309922

Synonym: Rmet_0977

Alternate gene names: NA

Gene position: 1063759-1063220 (Counterclockwise)

Preceding gene: 94309925

Following gene: 94309921

Centisome position: 27.08

GC content: 68.7

Gene sequence:

>540_bases
ATGCACACCACCCACACCGGCCACGATGCCAACTCCAGCGCCGGCCCTGATGCCGGCGCCCTCTCCGTCACTTCCGCACC
CCGGGTAGTCCTCGACTCCAATATCTGGGTAGACCTGCTGGTCTTCCGCGACCCGCATGTGGAACCGATCCGGGCCGCGC
TGGCGGCCGGCGCCATCGCACCGGTGATCCGCGCCGACTGCCGCGAGGAGCTGCGCCGGGTGCTGGCCTATCCCCAGTTC
ACCCGCTTTGCCGTCGATATCGACGCGGCGCTCGCGGAGGTCGACCGCTTCACCACGTTAGAACCGGTGCCCACCCAGGA
AGACGCTGACGCGATCCGCCTGCCCAAGTGCAAGGACACCGACGACCAGAAGTTCATCGAACTCGCCCATTTCTCGCGCG
CGGCGCTGCTGGTGTCCAAGGACAAGGCAGTGCTCAAGCTCCGCAGCCGCCTGCGCCGCTCCAGCGGGGTGGAAGTGCTG
CCGCCGCTGGCATTCGGCGGCTGGCTGGCGGCATGGGTGCCGCCCGATGATCGCGGCTAG

Upstream 100 bases:

>100_bases
CTTGACGCGTGGGGGTGTCTCGTAGTCCAGGGACTTGGCGGGAGACAGGACGATGAGCATGGCAAAATCGGGGGCAGAAA
CAAAGACCAGATTGTAGCGA

Downstream 100 bases:

>100_bases
AATGTCGCTCTGGCTGATTGCCCCGCTTCTACTCTTTCAAGCTCCGTCATGGCTGAATCCAACCTCGCCCCGCTGAATCC
GCCCCCGTCGCGCCTGCCCA

Product: putative nucleic acid-binding protein containing PIN domain

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MHTTHTGHDANSSAGPDAGALSVTSAPRVVLDSNIWVDLLVFRDPHVEPIRAALAAGAIAPVIRADCREELRRVLAYPQF
TRFAVDIDAALAEVDRFTTLEPVPTQEDADAIRLPKCKDTDDQKFIELAHFSRAALLVSKDKAVLKLRSRLRRSSGVEVL
PPLAFGGWLAAWVPPDDRG

Sequences:

>Translated_179_residues
MHTTHTGHDANSSAGPDAGALSVTSAPRVVLDSNIWVDLLVFRDPHVEPIRAALAAGAIAPVIRADCREELRRVLAYPQF
TRFAVDIDAALAEVDRFTTLEPVPTQEDADAIRLPKCKDTDDQKFIELAHFSRAALLVSKDKAVLKLRSRLRRSSGVEVL
PPLAFGGWLAAWVPPDDRG
>Mature_179_residues
MHTTHTGHDANSSAGPDAGALSVTSAPRVVLDSNIWVDLLVFRDPHVEPIRAALAAGAIAPVIRADCREELRRVLAYPQF
TRFAVDIDAALAEVDRFTTLEPVPTQEDADAIRLPKCKDTDDQKFIELAHFSRAALLVSKDKAVLKLRSRLRRSSGVEVL
PPLAFGGWLAAWVPPDDRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19539; Mature: 19539

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTTHTGHDANSSAGPDAGALSVTSAPRVVLDSNIWVDLLVFRDPHVEPIRAALAAGAIA
CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHH
PVIRADCREELRRVLAYPQFTRFAVDIDAALAEVDRFTTLEPVPTQEDADAIRLPKCKDT
HHHHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCC
DDQKFIELAHFSRAALLVSKDKAVLKLRSRLRRSSGVEVLPPLAFGGWLAAWVPPDDRG
CHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MHTTHTGHDANSSAGPDAGALSVTSAPRVVLDSNIWVDLLVFRDPHVEPIRAALAAGAIA
CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHH
PVIRADCREELRRVLAYPQFTRFAVDIDAALAEVDRFTTLEPVPTQEDADAIRLPKCKDT
HHHHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCC
DDQKFIELAHFSRAALLVSKDKAVLKLRSRLRRSSGVEVLPPLAFGGWLAAWVPPDDRG
CHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA