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The map label for this gene is ydeM [H]

Identifier: 94309891

GI number: 94309891

Start: 1031738

End: 1032187

Strand: Direct

Name: ydeM [H]

Synonym: Rmet_0946

Alternate gene names: 94309891

Gene position: 1031738-1032187 (Clockwise)

Preceding gene: 94309890

Following gene: 94309892

Centisome position: 26.27

GC content: 62.22

Gene sequence:

>450_bases
ATGTCCAAGATGTATTTCGAGGATTACGTCGTCGGCAGCGAGCACCCGCTCGGGAGCTATACGGTGACCGAAGAGGAGAT
CATCAGCTTCGCGCGCCAGTACGACCCGCAACCGTTTCACGTCGACAAGGCCGCTGCAGAGCAGAGCATCTACGGTGGGC
TGATTTCCAGCGGCTGGATGACCTGCGGCATCATCATGCGCCTGCTGGTGCAGTCGATGGGGGATCGCTCCACCAGCATG
GGGTCGCCCGGCGTGGATGAAGTCCGCTGGATCAAGCCGGTCTATGCCGGTGACACCCTGACTGCTGTGCTGAGGATTCT
GGAAGCGCGTCCGTCGAGCTCCAAGCCTGATCGCGGCGTGGTGATGACCCAGTGGGTGGCCACCAACCAGAAGGGCGAGG
TTGTGTGCACGGTCAAGGGCATGGGGATGTACAAGCGCCGCCCGGCCTGA

Upstream 100 bases:

>100_bases
TCGCCAGCCAGCCTGGCTTCCAGGAAGCTGCCTGAGTATTGCGTAAGTGTTCAAACCGCGCCGGTGACCCCGAGCGCGGT
TTTTTTCATTGGAGGACTTG

Downstream 100 bases:

>100_bases
CGCACGCCGTTTGTTCACTTCCCTCTGCCGCACGCGGGAGAAGGAAGGGCTACCCAACCAGAAAAGAACGACAAGGAGAC
AAGCACCATGCGTACTATCG

Product: putative acyl dehydratase with a MaoC-like domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSKMYFEDYVVGSEHPLGSYTVTEEEIISFARQYDPQPFHVDKAAAEQSIYGGLISSGWMTCGIIMRLLVQSMGDRSTSM
GSPGVDEVRWIKPVYAGDTLTAVLRILEARPSSSKPDRGVVMTQWVATNQKGEVVCTVKGMGMYKRRPA

Sequences:

>Translated_149_residues
MSKMYFEDYVVGSEHPLGSYTVTEEEIISFARQYDPQPFHVDKAAAEQSIYGGLISSGWMTCGIIMRLLVQSMGDRSTSM
GSPGVDEVRWIKPVYAGDTLTAVLRILEARPSSSKPDRGVVMTQWVATNQKGEVVCTVKGMGMYKRRPA
>Mature_148_residues
SKMYFEDYVVGSEHPLGSYTVTEEEIISFARQYDPQPFHVDKAAAEQSIYGGLISSGWMTCGIIMRLLVQSMGDRSTSMG
SPGVDEVRWIKPVYAGDTLTAVLRILEARPSSSKPDRGVVMTQWVATNQKGEVVCTVKGMGMYKRRPA

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16504; Mature: 16373

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMYFEDYVVGSEHPLGSYTVTEEEIISFARQYDPQPFHVDKAAAEQSIYGGLISSGWM
CCCCCCHHEECCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHH
TCGIIMRLLVQSMGDRSTSMGSPGVDEVRWIKPVYAGDTLTAVLRILEARPSSSKPDRGV
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHCCHHHHHHHHHHHCCCCCCCCCCCE
VMTQWVATNQKGEVVCTVKGMGMYKRRPA
EEEEEEECCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SKMYFEDYVVGSEHPLGSYTVTEEEIISFARQYDPQPFHVDKAAAEQSIYGGLISSGWM
CCCCCHHEECCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHH
TCGIIMRLLVQSMGDRSTSMGSPGVDEVRWIKPVYAGDTLTAVLRILEARPSSSKPDRGV
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHCCHHHHHHHHHHHCCCCCCCCCCCE
VMTQWVATNQKGEVVCTVKGMGMYKRRPA
EEEEEEECCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]