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The map label for this gene is bfrD [H]

Identifier: 94309782

GI number: 94309782

Start: 915139

End: 917418

Strand: Direct

Name: bfrD [H]

Synonym: Rmet_0837

Alternate gene names: 94309782

Gene position: 915139-917418 (Clockwise)

Preceding gene: 94309781

Following gene: 94309783

Centisome position: 23.3

GC content: 61.32

Gene sequence:

>2280_bases
GTGCAGCAAAAAATCCTATCGAGTGCCATCCGCGTGCTGGTTTCTGGCGCGGCCTCAGCCGGTCTGGCAATCTCCGTGTC
AGCTGTTCCGCTGGTCGTACATGCGCAAACCGCGCCTGAAGGTCAGAGTTCGGCTGGATCGGCCGACGACAGAAATGTGC
TGCCGTCTGTCACGGTAACGGGCAAGGGTGTTCCAAACACCAATGACGCACCGACGGGGATCTCTCGTCTGCCGGAGACC
ATCAAGGAAACGCCCAAGACGATCAACGTCGTGCCCAAGGAGGTTATCGAGCAGCAGCAGGCCACTTCGCTCGAACAGAT
CCTGAAGAACGTGCCGGGCATTACGATTTCCACGGGTGAGGGCAACGGCGGGCAGAACGGCGACCAGTTCCGCATTCGCG
GCCTTTCCGCCAAGGGCGACATCTATGTCGATGGTCTGCGGGACTTCGGCGCATACAAGCGCGACAGCTTCAACACCGAA
AGCGTGGAAGTGATCAAGGGACCGTCGGGTGAGACGTTCGGCGTGGGCAATATCGGTGGTCTGATCAACCAGTCGACCAA
GCGGGCGAACCTGAACACGAGCACCAGCATCGACCAGGGCGTCGGGTCGGCGTCGACGTACCGCACGACGGTCGACAGCA
ATATCCGCCTGAATGATACGTCCGCCGTACGTATCAACGGCGTGTTCCAGAATGGCCGTGTCGCGGATCGCGACCATGTC
GACGACGACCGCCGCGGTATCGCCATCGATTTCGGCACCGGCCTCGGCACCAGCACGGAATGGCACCTGAATTACTCCTA
CCTGCACCGTAGCGGCGCGCCGGATTTCGGTGTGCCGCTGGCGCAGGGTGCGGATGGCATCTTCCGTCCGCTGCCTGAGT
ACAACGTACCGGGTTACGCGTCGTCGACGTCCTACGTCCGCAATACCGACCGCGACATCACCGACGCCCATATCGTCTCG
TCGTCGTTCATGAAACGACTCGACAACGGCATCACCATCAACAACGACACGCGTTTCAGCTTCTACGAGCGCGATTTCTC
GTCAACCAACCCGGCGTCGCTCAACTACGCGAGCCTGCAGCGGTTGCTGGCGGGCGGCAACGTGAGTTTGTCGTACGGCG
CGGGCGGCGGCTCCACCTATCTGCAGCGCGGCTGGGGCATTCAGAACGTGCTGAGCGCCAAGGGCGAGTTCTATACCGGT
AGCTTCCGCCACAAGGCCATGGTCGGCCTGGATACGATCTATCAGCGTGACCATCGCGACATGGGCACGTGGACGGGCCG
CATGAACAACCAGACCGTCATGAACCCGATTTTCTACAACAGCCCGGGTGCGACGGTCAGTTATGGCGGCACCACGCGCG
ATGCGAACTCGATCGACGTTGGCGTATTCGCCAACGACCGCGTCTGGTTCAACGACCAGTTCTCGTTGATGGGCAGCCTG
CGCTGGGACTACTTCCGCAGCGAGTATTCGACCAACGCGTCCTCGGTCGGTGGCGTATCCGATTCGAAGAAGCTGAGCCC
GGCTATCAGCGCGATCTGGGAGCCGACCAAGGACTACATGTTCTACACGTCGTTCTCGCGCACCTATCGTCCGGTCGGGA
CCGATATCGCGGTGGCGGTCGGCGGCGTGCAGTCCGAGGTGCCGCAGAACGGCGTCAACACCGAGCCAGAGCGTGCCGAC
ACGATCGAAGTGGGCGCCAAGCTGGATTTCCTCGAAAAGCGCCTGGGCGTGACCGGTGCGATCTTCCAGACGAAGAAGTA
CAACGCGTACACGGTTGACCCGATCACCGGAGACATCACCAACGGTTTCTCGGATTCGGGTGAAGGCCGACGCATCCGCG
GCGCGGAAATTGGCCTGAGCGGGCGGATTACGAACAACTGGTCGGCCACGATGGCATATGCCTACCTGGACGGCATCGTC
ACCTCGGCCACGGCGCCTACCTCGATTGGCAATGTCGCCCCTGGCGTCTCGCGTCACAATGTGACGCTCTGGACCAGCTA
TGACATTCCGCACACGATCCTGCCGCTGCCCGGCCGGCTCACGGTGGGTGGTGGTCTCCAGTACGCCTCGGCCTATTGGG
CGGACACCGCGAACACCGCGCGTATGCCCGATAACTTCTCGCTCGATGCGATGATCGGTTACAAGCAGGGCAAGTTTCGC
GCGTCGCTCAATGCCTACAACCTGACGAATCGCCTGAACTATCAGTCGTCGTTCAACGTGGCACGTGCCGTACCCGCATC
CGGGCGGACGTTCCTGTTTAACGTCGGCATGACGTTCTAA

Upstream 100 bases:

>100_bases
CCGCAATGAGGTGGCCGCGATCGAAGCTGGATCGCGGCCTGACTTCGACTGGCGCGGCAGCACTGAACGTCATTTCAAGT
CATTCATGCTGGAGTCTTCC

Downstream 100 bases:

>100_bases
CGCAAGTCGCGGGCTTCACGGAGCGGCTACCATACGCTTTCCGGCGCACCTGTGCCGCTCCGCCAAACCTTGAAGTGCCA
TGCTCATTCAGATACCCAAT

Product: hydroxamate-type ferrisiderophore receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MQQKILSSAIRVLVSGAASAGLAISVSAVPLVVHAQTAPEGQSSAGSADDRNVLPSVTVTGKGVPNTNDAPTGISRLPET
IKETPKTINVVPKEVIEQQQATSLEQILKNVPGITISTGEGNGGQNGDQFRIRGLSAKGDIYVDGLRDFGAYKRDSFNTE
SVEVIKGPSGETFGVGNIGGLINQSTKRANLNTSTSIDQGVGSASTYRTTVDSNIRLNDTSAVRINGVFQNGRVADRDHV
DDDRRGIAIDFGTGLGTSTEWHLNYSYLHRSGAPDFGVPLAQGADGIFRPLPEYNVPGYASSTSYVRNTDRDITDAHIVS
SSFMKRLDNGITINNDTRFSFYERDFSSTNPASLNYASLQRLLAGGNVSLSYGAGGGSTYLQRGWGIQNVLSAKGEFYTG
SFRHKAMVGLDTIYQRDHRDMGTWTGRMNNQTVMNPIFYNSPGATVSYGGTTRDANSIDVGVFANDRVWFNDQFSLMGSL
RWDYFRSEYSTNASSVGGVSDSKKLSPAISAIWEPTKDYMFYTSFSRTYRPVGTDIAVAVGGVQSEVPQNGVNTEPERAD
TIEVGAKLDFLEKRLGVTGAIFQTKKYNAYTVDPITGDITNGFSDSGEGRRIRGAEIGLSGRITNNWSATMAYAYLDGIV
TSATAPTSIGNVAPGVSRHNVTLWTSYDIPHTILPLPGRLTVGGGLQYASAYWADTANTARMPDNFSLDAMIGYKQGKFR
ASLNAYNLTNRLNYQSSFNVARAVPASGRTFLFNVGMTF

Sequences:

>Translated_759_residues
MQQKILSSAIRVLVSGAASAGLAISVSAVPLVVHAQTAPEGQSSAGSADDRNVLPSVTVTGKGVPNTNDAPTGISRLPET
IKETPKTINVVPKEVIEQQQATSLEQILKNVPGITISTGEGNGGQNGDQFRIRGLSAKGDIYVDGLRDFGAYKRDSFNTE
SVEVIKGPSGETFGVGNIGGLINQSTKRANLNTSTSIDQGVGSASTYRTTVDSNIRLNDTSAVRINGVFQNGRVADRDHV
DDDRRGIAIDFGTGLGTSTEWHLNYSYLHRSGAPDFGVPLAQGADGIFRPLPEYNVPGYASSTSYVRNTDRDITDAHIVS
SSFMKRLDNGITINNDTRFSFYERDFSSTNPASLNYASLQRLLAGGNVSLSYGAGGGSTYLQRGWGIQNVLSAKGEFYTG
SFRHKAMVGLDTIYQRDHRDMGTWTGRMNNQTVMNPIFYNSPGATVSYGGTTRDANSIDVGVFANDRVWFNDQFSLMGSL
RWDYFRSEYSTNASSVGGVSDSKKLSPAISAIWEPTKDYMFYTSFSRTYRPVGTDIAVAVGGVQSEVPQNGVNTEPERAD
TIEVGAKLDFLEKRLGVTGAIFQTKKYNAYTVDPITGDITNGFSDSGEGRRIRGAEIGLSGRITNNWSATMAYAYLDGIV
TSATAPTSIGNVAPGVSRHNVTLWTSYDIPHTILPLPGRLTVGGGLQYASAYWADTANTARMPDNFSLDAMIGYKQGKFR
ASLNAYNLTNRLNYQSSFNVARAVPASGRTFLFNVGMTF
>Mature_759_residues
MQQKILSSAIRVLVSGAASAGLAISVSAVPLVVHAQTAPEGQSSAGSADDRNVLPSVTVTGKGVPNTNDAPTGISRLPET
IKETPKTINVVPKEVIEQQQATSLEQILKNVPGITISTGEGNGGQNGDQFRIRGLSAKGDIYVDGLRDFGAYKRDSFNTE
SVEVIKGPSGETFGVGNIGGLINQSTKRANLNTSTSIDQGVGSASTYRTTVDSNIRLNDTSAVRINGVFQNGRVADRDHV
DDDRRGIAIDFGTGLGTSTEWHLNYSYLHRSGAPDFGVPLAQGADGIFRPLPEYNVPGYASSTSYVRNTDRDITDAHIVS
SSFMKRLDNGITINNDTRFSFYERDFSSTNPASLNYASLQRLLAGGNVSLSYGAGGGSTYLQRGWGIQNVLSAKGEFYTG
SFRHKAMVGLDTIYQRDHRDMGTWTGRMNNQTVMNPIFYNSPGATVSYGGTTRDANSIDVGVFANDRVWFNDQFSLMGSL
RWDYFRSEYSTNASSVGGVSDSKKLSPAISAIWEPTKDYMFYTSFSRTYRPVGTDIAVAVGGVQSEVPQNGVNTEPERAD
TIEVGAKLDFLEKRLGVTGAIFQTKKYNAYTVDPITGDITNGFSDSGEGRRIRGAEIGLSGRITNNWSATMAYAYLDGIV
TSATAPTSIGNVAPGVSRHNVTLWTSYDIPHTILPLPGRLTVGGGLQYASAYWADTANTARMPDNFSLDAMIGYKQGKFR
ASLNAYNLTNRLNYQSSFNVARAVPASGRTFLFNVGMTF

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=811, Percent_Identity=26.8803945745993, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI1786344, Length=706, Percent_Identity=23.6543909348442, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1787344, Length=706, Percent_Identity=23.0878186968839, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81743; Mature: 81743

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQKILSSAIRVLVSGAASAGLAISVSAVPLVVHAQTAPEGQSSAGSADDRNVLPSVTVT
CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
GKGVPNTNDAPTGISRLPETIKETPKTINVVPKEVIEQQQATSLEQILKNVPGITISTGE
CCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCC
GNGGQNGDQFRIRGLSAKGDIYVDGLRDFGAYKRDSFNTESVEVIKGPSGETFGVGNIGG
CCCCCCCCEEEEEEECCCCCEEEECHHHCCCCCCCCCCCCCEEEEECCCCCEECCCCCCH
LINQSTKRANLNTSTSIDQGVGSASTYRTTVDSNIRLNDTSAVRINGVFQNGRVADRDHV
HHCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCEEECCCCEEEEEEEECCCCCCCCCCC
DDDRRGIAIDFGTGLGTSTEWHLNYSYLHRSGAPDFGVPLAQGADGIFRPLPEYNVPGYA
CCCCCEEEEECCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHCCCCCHHCCCCCCCCCCCC
SSTSYVRNTDRDITDAHIVSSSFMKRLDNGITINNDTRFSFYERDFSSTNPASLNYASLQ
CCCCHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCCCCCCHHHHH
RLLAGGNVSLSYGAGGGSTYLQRGWGIQNVLSAKGEFYTGSFRHKAMVGLDTIYQRDHRD
HHHCCCCEEEEECCCCCCHHHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCC
MGTWTGRMNNQTVMNPIFYNSPGATVSYGGTTRDANSIDVGVFANDRVWFNDQFSLMGSL
CCCCCCCCCCCEEECCEEECCCCCEEECCCCCCCCCCEEEEEEECCEEEECCHHHHHHHH
RWDYFRSEYSTNASSVGGVSDSKKLSPAISAIWEPTKDYMFYTSFSRTYRPVGTDIAVAV
HHHHHHHHHCCCCCCCCCCCCCCHHCHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEE
GGVQSEVPQNGVNTEPERADTIEVGAKLDFLEKRLGVTGAIFQTKKYNAYTVDPITGDIT
CCHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCC
NGFSDSGEGRRIRGAEIGLSGRITNNWSATMAYAYLDGIVTSATAPTSIGNVAPGVSRHN
CCCCCCCCCCEEECEEECCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
VTLWTSYDIPHTILPLPGRLTVGGGLQYASAYWADTANTARMPDNFSLDAMIGYKQGKFR
EEEEEECCCCCEEECCCCEEEECCCCCCHHEEECCCCCCCCCCCCCCEEEEEECCCCCEE
ASLNAYNLTNRLNYQSSFNVARAVPASGRTFLFNVGMTF
EECEEEECCHHCCCCCCCCCEEECCCCCCEEEEECCCCC
>Mature Secondary Structure
MQQKILSSAIRVLVSGAASAGLAISVSAVPLVVHAQTAPEGQSSAGSADDRNVLPSVTVT
CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
GKGVPNTNDAPTGISRLPETIKETPKTINVVPKEVIEQQQATSLEQILKNVPGITISTGE
CCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCC
GNGGQNGDQFRIRGLSAKGDIYVDGLRDFGAYKRDSFNTESVEVIKGPSGETFGVGNIGG
CCCCCCCCEEEEEEECCCCCEEEECHHHCCCCCCCCCCCCCEEEEECCCCCEECCCCCCH
LINQSTKRANLNTSTSIDQGVGSASTYRTTVDSNIRLNDTSAVRINGVFQNGRVADRDHV
HHCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCEEECCCCEEEEEEEECCCCCCCCCCC
DDDRRGIAIDFGTGLGTSTEWHLNYSYLHRSGAPDFGVPLAQGADGIFRPLPEYNVPGYA
CCCCCEEEEECCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHCCCCCHHCCCCCCCCCCCC
SSTSYVRNTDRDITDAHIVSSSFMKRLDNGITINNDTRFSFYERDFSSTNPASLNYASLQ
CCCCHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCCCCCCHHHHH
RLLAGGNVSLSYGAGGGSTYLQRGWGIQNVLSAKGEFYTGSFRHKAMVGLDTIYQRDHRD
HHHCCCCEEEEECCCCCCHHHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCC
MGTWTGRMNNQTVMNPIFYNSPGATVSYGGTTRDANSIDVGVFANDRVWFNDQFSLMGSL
CCCCCCCCCCCEEECCEEECCCCCEEECCCCCCCCCCEEEEEEECCEEEECCHHHHHHHH
RWDYFRSEYSTNASSVGGVSDSKKLSPAISAIWEPTKDYMFYTSFSRTYRPVGTDIAVAV
HHHHHHHHHCCCCCCCCCCCCCCHHCHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEE
GGVQSEVPQNGVNTEPERADTIEVGAKLDFLEKRLGVTGAIFQTKKYNAYTVDPITGDIT
CCHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCC
NGFSDSGEGRRIRGAEIGLSGRITNNWSATMAYAYLDGIVTSATAPTSIGNVAPGVSRHN
CCCCCCCCCCEEECEEECCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
VTLWTSYDIPHTILPLPGRLTVGGGLQYASAYWADTANTARMPDNFSLDAMIGYKQGKFR
EEEEEECCCCCEEECCCCEEEECCCCCCHHEEECCCCCCCCCCCCCCEEEEEECCCCCEE
ASLNAYNLTNRLNYQSSFNVARAVPASGRTFLFNVGMTF
EECEEEECCHHCCCCCCCCCEEECCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]