Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 94309775

GI number: 94309775

Start: 904524

End: 905744

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_0830

Alternate gene names: 94309775

Gene position: 905744-904524 (Counterclockwise)

Preceding gene: 94309777

Following gene: 94309774

Centisome position: 23.06

GC content: 66.83

Gene sequence:

>1221_bases
ATGGGAGCTTTAAGCCATCTTCGCGTCCTCGACCTGACCCGCGTGCTCGCGGGCCCGTGGTGCGCCCAGAATCTTGCCGA
TTTCGGCGCCGACGTGATCAAGATCGAGCGCCCAGGCGCCGGTGACGACACGCGCATCTGGGGCCCGCCCTGGCTCAAGA
CCCCCGAGGGTGAAGACACGGCCGAGGCCGCCTACTACCTGGCGGCCAACCGCAACAAGCGTTCGGTGACGTGCGACATC
AGCACGCCGGAGGGGCAGCAACTCGTGCGCGACCTGGCCGCGCAGAGCGATGTGGTGCTCGAAAACTACAAGGTCGGACA
ACTCAAGAAGTATGGCCTCGATTATGAATCGCTCAAAGCGATCAAGCCGGACCTGATCTACTGCTCGGTCACCGGCTTCG
GACAGACCGGCCCCTACGCCCAGCGTCCGGGCTACGATTTCATCATCCAGGGCATGGGTGGCTTCATGAGCATCACGGGC
GAGCGCGACGACCTGCCCGGAGGCGGCCCGCAGAAAGCCGGCGTGGCGATCTCCGACCTCATGACGGGCCAGTACGCCAC
CATCGCCGTGCTGGCCGCACTGGCCCACCGCGACCGTACCGGCGAAGGCCAGTACATCGACATGGCGCTGCTGGACGTGC
AGGTGTCGATGCTGGCGAACATGAACACCAACTACCTGGCCAGCGGCGTCCCGCCGAAGCGCTGGGGCAACGCGCACCCG
AACATCGTCCCTTACCAGACGTTCCAGGCCGCCGATGGATGGCTCATCGTCGCGGTGGGCAACGACGGCCAGTTCCGCAA
GTTCGTCACCGCCGGCGGCCGCCCCGAGTTGGCCGACGACCCGCGCTTCGCCACCAATCCGCAGCGCGTGGCGCACCGAG
ACGTGCTGGTACCGATCCTGGCCGAGATGGTGGCGCCGCGCACGCGTGAACAGTGGATTCTGGACCTCGAGCGTGCCAGC
GTGCCATGCGGGCCGATCAACACGCTCGACGAGGTCTTCGAGAACGAGCAGGTGGTGGCGCGTGGCCTGCGCGTGGACCT
GCCCCACCCCTCGGCCGGCACGGTCAAGCTGGTGGGCAGCCCGATGAAGATGAGCGCCACGCCGACCGAGGCGCTGCGCC
ATCCGCCGTTGCTTGGGGAGCACACGGATGTGGTGCTTGGCGAGACACTCGGCTACAGTGCCGAACACATCGCCGCCCTG
CGCAACAAGGGCGTGGTCTGA

Upstream 100 bases:

>100_bases
ATCGCCCAAGGATCGTCCCTCGGGATTCCGCGCAGGGACATCGCCCGACTGCCCCGGTGATAGAGTGCTGGCTCTTTCGA
ACCTGCCTGCCGCCATCGCC

Downstream 100 bases:

>100_bases
CCTGCCCCGCCCACGCTTTTCGCCATTGACTTGACCGCACCCGCTCCGGCGGGTGCGCGCAGCCGGTGATCATGACGTTT
CCCCAACCCTGAGGAGAATG

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRIWGPPWLKTPEGEDTAEAAYYLAANRNKRSVTCDI
STPEGQQLVRDLAAQSDVVLENYKVGQLKKYGLDYESLKAIKPDLIYCSVTGFGQTGPYAQRPGYDFIIQGMGGFMSITG
ERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDVQVSMLANMNTNYLASGVPPKRWGNAHP
NIVPYQTFQAADGWLIVAVGNDGQFRKFVTAGGRPELADDPRFATNPQRVAHRDVLVPILAEMVAPRTREQWILDLERAS
VPCGPINTLDEVFENEQVVARGLRVDLPHPSAGTVKLVGSPMKMSATPTEALRHPPLLGEHTDVVLGETLGYSAEHIAAL
RNKGVV

Sequences:

>Translated_406_residues
MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRIWGPPWLKTPEGEDTAEAAYYLAANRNKRSVTCDI
STPEGQQLVRDLAAQSDVVLENYKVGQLKKYGLDYESLKAIKPDLIYCSVTGFGQTGPYAQRPGYDFIIQGMGGFMSITG
ERDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDVQVSMLANMNTNYLASGVPPKRWGNAHP
NIVPYQTFQAADGWLIVAVGNDGQFRKFVTAGGRPELADDPRFATNPQRVAHRDVLVPILAEMVAPRTREQWILDLERAS
VPCGPINTLDEVFENEQVVARGLRVDLPHPSAGTVKLVGSPMKMSATPTEALRHPPLLGEHTDVVLGETLGYSAEHIAAL
RNKGVV
>Mature_405_residues
GALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRIWGPPWLKTPEGEDTAEAAYYLAANRNKRSVTCDIS
TPEGQQLVRDLAAQSDVVLENYKVGQLKKYGLDYESLKAIKPDLIYCSVTGFGQTGPYAQRPGYDFIIQGMGGFMSITGE
RDDLPGGGPQKAGVAISDLMTGQYATIAVLAALAHRDRTGEGQYIDMALLDVQVSMLANMNTNYLASGVPPKRWGNAHPN
IVPYQTFQAADGWLIVAVGNDGQFRKFVTAGGRPELADDPRFATNPQRVAHRDVLVPILAEMVAPRTREQWILDLERASV
PCGPINTLDEVFENEQVVARGLRVDLPHPSAGTVKLVGSPMKMSATPTEALRHPPLLGEHTDVVLGETLGYSAEHIAALR
NKGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=44.1687344913151, Blast_Score=357, Evalue=1e-98,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=41.4918414918415, Blast_Score=343, Evalue=2e-94,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=38.9578163771712, Blast_Score=295, Evalue=3e-80,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=37.7622377622378, Blast_Score=293, Evalue=3e-79,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=25.6723716381418, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=25.6723716381418, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI266458397, Length=272, Percent_Identity=28.6764705882353, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458393, Length=272, Percent_Identity=28.6764705882353, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=31.9018404907975, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=31.9018404907975, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=364, Percent_Identity=34.0659340659341, Blast_Score=231, Evalue=8e-62,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=31.2941176470588, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1786222, Length=413, Percent_Identity=25.4237288135593, Blast_Score=99, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=352, Percent_Identity=24.1477272727273, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=353, Percent_Identity=24.3626062322946, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=48.8833746898263, Blast_Score=377, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24585488, Length=350, Percent_Identity=26.5714285714286, Blast_Score=103, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43951; Mature: 43819

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRIWGPPWLKTPEGEDT
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCH
AEAAYYLAANRNKRSVTCDISTPEGQQLVRDLAAQSDVVLENYKVGQLKKYGLDYESLKA
HHEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH
IKPDLIYCSVTGFGQTGPYAQRPGYDFIIQGMGGFMSITGERDDLPGGGPQKAGVAISDL
CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEHHHH
MTGQYATIAVLAALAHRDRTGEGQYIDMALLDVQVSMLANMNTNYLASGVPPKRWGNAHP
HCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEECCCCHHHCCCCCC
NIVPYQTFQAADGWLIVAVGNDGQFRKFVTAGGRPELADDPRFATNPQRVAHRDVLVPIL
CCCCCCEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AEMVAPRTREQWILDLERASVPCGPINTLDEVFENEQVVARGLRVDLPHPSAGTVKLVGS
HHHHCCCCCHHHHEEHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEECCCCCCCEEEEECC
PMKMSATPTEALRHPPLLGEHTDVVLGETLGYSAEHIAALRNKGVV
CCCCCCCHHHHHCCCCCCCCCCCEEEEHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GALSHLRVLDLTRVLAGPWCAQNLADFGADVIKIERPGAGDDTRIWGPPWLKTPEGEDT
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCH
AEAAYYLAANRNKRSVTCDISTPEGQQLVRDLAAQSDVVLENYKVGQLKKYGLDYESLKA
HHEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH
IKPDLIYCSVTGFGQTGPYAQRPGYDFIIQGMGGFMSITGERDDLPGGGPQKAGVAISDL
CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEHHHH
MTGQYATIAVLAALAHRDRTGEGQYIDMALLDVQVSMLANMNTNYLASGVPPKRWGNAHP
HCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEECCCCHHHCCCCCC
NIVPYQTFQAADGWLIVAVGNDGQFRKFVTAGGRPELADDPRFATNPQRVAHRDVLVPIL
CCCCCCEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AEMVAPRTREQWILDLERASVPCGPINTLDEVFENEQVVARGLRVDLPHPSAGTVKLVGS
HHHHCCCCCHHHHEEHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEECCCCCCCEEEEECC
PMKMSATPTEALRHPPLLGEHTDVVLGETLGYSAEHIAALRNKGVV
CCCCCCCHHHHHCCCCCCCCCCCEEEEHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]