Click here to switch to the map view.

The map label for this gene is cpaC1 [C]

Identifier: 94309592

GI number: 94309592

Start: 713059

End: 714921

Strand: Reverse

Name: cpaC1 [C]

Synonym: Rmet_0647

Alternate gene names: 94309592

Gene position: 714921-713059 (Counterclockwise)

Preceding gene: 94309593

Following gene: 94309591

Centisome position: 18.2

GC content: 67.2

Gene sequence:

>1863_bases
ATGAACCAGAAGACAACTGAAGCAGCACGCGGCACACGCCACTTCGTCCTGGCCGCCATCCTCTGCACACCGCTCGCCGC
CGCGGCACAGGTCGCGGTAGAAGCCGGCAACGTCGCCAGGTCGACCACGCCGGCGGCGGCCTCGCCAGCGGTCAAGGTCC
CGGGAGGACCCGTGCAGATGACCATCAGCATGGCGCCCGTGCCCGCCGCCCCCTCGATCGCCGCTGACGCCCGGGGCCCG
AACTGCTCCGGCGCGATCCGCAACGAATCGAGCGTGATCGTGCCGATCGGCAAGTCGCAGCTGATTCCGCTGCCCGAGCC
AGTACGCAACCGCACGCTGGGCAACCCGAACGTCGTGCAGGCCACGATGGTGTCGCCGCAGACGCTCTATGTCCTCGGCC
GCAGCGTGGGCACCACCAACATGATCGTGCAGGGCCGCAGTGGCGGTTGCAGCATCATCAACGTGGTGGTCAACGCGGAC
TCGAACGGACTGCAGACCTCGCTGGCCCAGTTGCTGCCGGGTGAATCGGGCATCCGCGTGATGACCGCCGCGGACAATCT
GGTACTGACCGGCAGCGTCTCCAGTTCACAGGCTGCACTGCAGGCCATGGATATCGCCCAGGCGTACGCCAACGCGGCAC
AGGGCGACGGCGCCAACGGCAAGAAGGGCGGCGTGCTCAACATGATGTCCGTCGACACCCCGCAGCAGGTGATGTTGGAG
GTGAAGGTTGCCGAAGTCTCCAAGACGCTGCTCAACCAGCTCGGTTCGGCAGTCAATATCCAGGGCGGCTTCGGATCGTG
GACCGGTGGCGTGATCTCGAACCTGCTCACGGGTGCGGCGGCCGGCATCTTCGGTAGCAAGGCCAACAACAAGCCGTTCA
ATCTCGCGATCGACGCGCAGAAGAACGACAGCCTGGTAAAGGTTCTTGCCGAACCGAATCTGGTCACCATCAGCGGTCAA
GAAGCCAGCTTCCTCGCAGGCGGCAAGATCTACATCCCGGTCGCGCAGAGCAACGCGCTCGGTGGCGCCTCCACCATCAC
GCTGCAGGAAGAAGAGTTCGGCGTGGGGCTGAAGTTCACCCCGACCGTGCTGGCCAATGGACGGATCCACCTGAAGGTGT
CGCCGGAAGTCTCGGAACTGTCGCCAACTGGGGCAACGGTCAGCGGCAGCACGCTGACCGGACAGACGATCCTGCCGCTC
ATCACGACTCGCCGCGCCTCCACCACCGTGCAGATGCGCGATGGCGAGAGCTTCGCGATCGGTGGCCTGCTGCAGGACAG
CGCACGTGGCTCGCTGAAGGCACTGCCTGGCGCTGGTGAGGTTCCGGTGCTTGGCACGCTGTTCCGCAGCACGCAGTTCC
AGCAAGACCTGACCGAGCTGGTGTTCATCATCACGCCGCACCTGGTCAAGCCAATGCAGACGCAGAACTATCCGCTGCCG
ACCGACGGCTTCACTACGCCTGACCCGCTGTCGCTCTACTTCATGGGCAACATGGAAGGCAAGGGCAGGCCTGCTCCGCA
GCCGGCACCGGCGCCTTCGCAACCCGCCGCGCCCGCCACGGCACCTGCTCCCGTGCCTTCGACCCCGCGCAGCGAAGCCG
GCCCGACCACGTCGGTTCCCACCAGCCCCACTCCGATCGGCAAGCTCCTGGACGAGCCGGCGCCGTCGGCCCCCGCGGCT
TCGCCAGCACCAGTGGCAACCGTGGGGCCACGGCCGCCCCAGGGGCCCGCACGTGACCTCGTAGCCGCCACTCCGCCCGA
GGACAACAGCGCGCGTGTCGCGCGCATCGAGGCCACTGCGCTCCGCCTGGCCCAGGCAAGGGCCGCGGCCGCGACCACCC
CCGGCACCACGGGCAGCAACTGA

Upstream 100 bases:

>100_bases
GGAGTGCTTCTGACCGTAAAGGGTGAAACAGCCGAAGCACCGAGACACCTAGACGCTTAGCGCATCCAGATCCGCTTCAC
TCTCCGGGGGGAGATCAAAA

Downstream 100 bases:

>100_bases
TCCGCCACGCGCAAGGGAAACTAAGGAGAACGATCATGAACAAGACACTCAAGCTTTCGCGTGGCGCCACAGTGCTGGCG
GTTGGCACCCTGGCCTGCAT

Product: Flp pilus assembly protein secretin CpaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 620

Protein sequence:

>620_residues
MNQKTTEAARGTRHFVLAAILCTPLAAAAQVAVEAGNVARSTTPAAASPAVKVPGGPVQMTISMAPVPAAPSIAADARGP
NCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVVQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSIINVVVNAD
SNGLQTSLAQLLPGESGIRVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGDGANGKKGGVLNMMSVDTPQQVMLE
VKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKPFNLAIDAQKNDSLVKVLAEPNLVTISGQ
EASFLAGGKIYIPVAQSNALGGASTITLQEEEFGVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPL
ITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLP
TDGFTTPDPLSLYFMGNMEGKGRPAPQPAPAPSQPAAPATAPAPVPSTPRSEAGPTTSVPTSPTPIGKLLDEPAPSAPAA
SPAPVATVGPRPPQGPARDLVAATPPEDNSARVARIEATALRLAQARAAAATTPGTTGSN

Sequences:

>Translated_620_residues
MNQKTTEAARGTRHFVLAAILCTPLAAAAQVAVEAGNVARSTTPAAASPAVKVPGGPVQMTISMAPVPAAPSIAADARGP
NCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVVQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSIINVVVNAD
SNGLQTSLAQLLPGESGIRVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGDGANGKKGGVLNMMSVDTPQQVMLE
VKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKPFNLAIDAQKNDSLVKVLAEPNLVTISGQ
EASFLAGGKIYIPVAQSNALGGASTITLQEEEFGVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPL
ITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLP
TDGFTTPDPLSLYFMGNMEGKGRPAPQPAPAPSQPAAPATAPAPVPSTPRSEAGPTTSVPTSPTPIGKLLDEPAPSAPAA
SPAPVATVGPRPPQGPARDLVAATPPEDNSARVARIEATALRLAQARAAAATTPGTTGSN
>Mature_620_residues
MNQKTTEAARGTRHFVLAAILCTPLAAAAQVAVEAGNVARSTTPAAASPAVKVPGGPVQMTISMAPVPAAPSIAADARGP
NCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVVQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSIINVVVNAD
SNGLQTSLAQLLPGESGIRVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGDGANGKKGGVLNMMSVDTPQQVMLE
VKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKPFNLAIDAQKNDSLVKVLAEPNLVTISGQ
EASFLAGGKIYIPVAQSNALGGASTITLQEEEFGVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPL
ITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLP
TDGFTTPDPLSLYFMGNMEGKGRPAPQPAPAPSQPAAPATAPAPVPSTPRSEAGPTTSVPTSPTPIGKLLDEPAPSAPAA
SPAPVATVGPRPPQGPARDLVAATPPEDNSARVARIEATALRLAQARAAAATTPGTTGSN

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=241, Percent_Identity=27.8008298755187, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87082242, Length=193, Percent_Identity=26.4248704663212, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 62939; Mature: 62939

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKTTEAARGTRHFVLAAILCTPLAAAAQVAVEAGNVARSTTPAAASPAVKVPGGPVQM
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEE
TISMAPVPAAPSIAADARGPNCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVVQ
EEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEE
ATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSIINVVVNADSNGLQTSLAQLLPGESGIRV
EEECCCEEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCEE
MTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGDGANGKKGGVLNMMSVDTPQQVMLE
EEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHEEEE
VKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKPFNLAIDAQ
EHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
KNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEEFGVGLKFT
CCCCEEEEEECCCEEEEECCCCEEEECCEEEEEEECCCCCCCCEEEEEEHHHHCCCEEEC
PTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQMRDGESFAI
CEEEECCEEEEEECCCHHHCCCCCCEECCCEECCCEEEEEEEECCCCEEEEEECCCEEEE
GGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLP
CCEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TDGFTTPDPLSLYFMGNMEGKGRPAPQPAPAPSQPAAPATAPAPVPSTPRSEAGPTTSVP
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TSPTPIGKLLDEPAPSAPAASPAPVATVGPRPPQGPARDLVAATPPEDNSARVARIEATA
CCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHCCEEECCCCCCCCEEEEEHHHH
LRLAQARAAAATTPGTTGSN
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNQKTTEAARGTRHFVLAAILCTPLAAAAQVAVEAGNVARSTTPAAASPAVKVPGGPVQM
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEE
TISMAPVPAAPSIAADARGPNCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVVQ
EEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEE
ATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSIINVVVNADSNGLQTSLAQLLPGESGIRV
EEECCCEEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCEE
MTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGDGANGKKGGVLNMMSVDTPQQVMLE
EEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHEEEE
VKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKPFNLAIDAQ
EHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
KNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEEFGVGLKFT
CCCCEEEEEECCCEEEEECCCCEEEECCEEEEEEECCCCCCCCEEEEEEHHHHCCCEEEC
PTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQMRDGESFAI
CEEEECCEEEEEECCCHHHCCCCCCEECCCEECCCEEEEEEEECCCCEEEEEECCCEEEE
GGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLP
CCEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TDGFTTPDPLSLYFMGNMEGKGRPAPQPAPAPSQPAAPATAPAPVPSTPRSEAGPTTSVP
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TSPTPIGKLLDEPAPSAPAASPAPVATVGPRPPQGPARDLVAATPPEDNSARVARIEATA
CCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHCCEEECCCCCCCCEEEEEHHHH
LRLAQARAAAATTPGTTGSN
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]