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The map label for this gene is fdhD [H]

Identifier: 94309501

GI number: 94309501

Start: 595934

End: 596779

Strand: Direct

Name: fdhD [H]

Synonym: Rmet_0556

Alternate gene names: 94309501

Gene position: 595934-596779 (Clockwise)

Preceding gene: 94309500

Following gene: 94309502

Centisome position: 15.17

GC content: 67.61

Gene sequence:

>846_bases
ATGAAGCGAGACATGCCTGACGAGAACGGCCTGGGTGAAGCTGGAGTATTGCCAGTGCAGCACACGCGTGCGGTCACGCG
CTGGCGGCAGGGTGCCGCCTCCGCCGAGATCGATCATCTGGCCGAGGAAATGCCGGTGGCGTTCGAGTACAACGGCATCT
CCCACGCGGTGATGCTGGCCACGCCGGCGGACCTGGAGGATTTTGCGATCGGCTTCAGCCTGACCGAGGGCGTGGTCGAC
AGCGCGCGCGACATCTACGGTATCGAGGTGGAAGCCGCCGAGAATGGCGTGACGGTGAAGCTGGAGATCGCCAGCGCTGC
GTTCGTCACGCTCAAGAGCCGGCGCAGGGCGTTGGCGGGACGTACCGGTTGCGGTCTCTGCGGCACGGAATCGCTCGAGG
AGGTCATGCGCGCGCCGCGGAAGGTGCATAGCACTGCGGTGTTCGATCCCGTGGTGTTCGATGATGCCTTCGCCGCGCTG
CACAAGCGGCAGGCGCTGCTGCGCGATACCGGTGCCACGCACGCGGCAGCGTGGTTGCGCGCGGATGGCGACGTATCGCT
GGTGCGCGAGGACGTGGGCCGCCACAACGCACTCGACAAACTGGCCGGCGCGCTGGCGCGGGGCGGCGAGGACGTGAGTC
ATGGCGCAGTGATCGTCACCAGCCGCGCCAGCTACGAGATGGTGCTCAAGACGGCCTCGATTGGCGCGGGTATCCTGGCG
GCGGTGTCCGGATCAACGGGGCTGGCTGCGCGTCTGGCCGAATCGGCGGGCGTCACGCTGGCCGGTTTCGTGCGCGGCGG
CACCCTGGTCGCCTACTCTCACCCCCAACGACTCAAGCTTGCGTAG

Upstream 100 bases:

>100_bases
ACGTGGCAGCGCAACTACCATGCCTTCAACGAGGAACAGCTGGCACATCTGCGCGCGGCCGGCGAACCCACACCGACGCG
ATGAGCCAGGGAGCACGGCG

Downstream 100 bases:

>100_bases
GGTCCTTCATGCATATCGACAATCTGGTCAAGATGGCCAATCAGATCGGCACGTTCTTCGAAGCGATGCCAGATCGAGAT
GAAGCGCTGGGGGATATCGC

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: Protein fdsC [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKRDMPDENGLGEAGVLPVQHTRAVTRWRQGAASAEIDHLAEEMPVAFEYNGISHAVMLATPADLEDFAIGFSLTEGVVD
SARDIYGIEVEAAENGVTVKLEIASAAFVTLKSRRRALAGRTGCGLCGTESLEEVMRAPRKVHSTAVFDPVVFDDAFAAL
HKRQALLRDTGATHAAAWLRADGDVSLVREDVGRHNALDKLAGALARGGEDVSHGAVIVTSRASYEMVLKTASIGAGILA
AVSGSTGLAARLAESAGVTLAGFVRGGTLVAYSHPQRLKLA

Sequences:

>Translated_281_residues
MKRDMPDENGLGEAGVLPVQHTRAVTRWRQGAASAEIDHLAEEMPVAFEYNGISHAVMLATPADLEDFAIGFSLTEGVVD
SARDIYGIEVEAAENGVTVKLEIASAAFVTLKSRRRALAGRTGCGLCGTESLEEVMRAPRKVHSTAVFDPVVFDDAFAAL
HKRQALLRDTGATHAAAWLRADGDVSLVREDVGRHNALDKLAGALARGGEDVSHGAVIVTSRASYEMVLKTASIGAGILA
AVSGSTGLAARLAESAGVTLAGFVRGGTLVAYSHPQRLKLA
>Mature_281_residues
MKRDMPDENGLGEAGVLPVQHTRAVTRWRQGAASAEIDHLAEEMPVAFEYNGISHAVMLATPADLEDFAIGFSLTEGVVD
SARDIYGIEVEAAENGVTVKLEIASAAFVTLKSRRRALAGRTGCGLCGTESLEEVMRAPRKVHSTAVFDPVVFDDAFAAL
HKRQALLRDTGATHAAAWLRADGDVSLVREDVGRHNALDKLAGALARGGEDVSHGAVIVTSRASYEMVLKTASIGAGILA
AVSGSTGLAARLAESAGVTLAGFVRGGTLVAYSHPQRLKLA

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=257, Percent_Identity=49.8054474708171, Blast_Score=253, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 29484; Mature: 29484

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRDMPDENGLGEAGVLPVQHTRAVTRWRQGAASAEIDHLAEEMPVAFEYNGISHAVMLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEE
TPADLEDFAIGFSLTEGVVDSARDIYGIEVEAAENGVTVKLEIASAAFVTLKSRRRALAG
CCCCHHHHHCCHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCC
RTGCGLCGTESLEEVMRAPRKVHSTAVFDPVVFDDAFAALHKRQALLRDTGATHAAAWLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHEEE
ADGDVSLVREDVGRHNALDKLAGALARGGEDVSHGAVIVTSRASYEMVLKTASIGAGILA
CCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEHHCCCCCEEE
AVSGSTGLAARLAESAGVTLAGFVRGGTLVAYSHPQRLKLA
EECCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCEECC
>Mature Secondary Structure
MKRDMPDENGLGEAGVLPVQHTRAVTRWRQGAASAEIDHLAEEMPVAFEYNGISHAVMLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEE
TPADLEDFAIGFSLTEGVVDSARDIYGIEVEAAENGVTVKLEIASAAFVTLKSRRRALAG
CCCCHHHHHCCHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCC
RTGCGLCGTESLEEVMRAPRKVHSTAVFDPVVFDDAFAALHKRQALLRDTGATHAAAWLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHEEE
ADGDVSLVREDVGRHNALDKLAGALARGGEDVSHGAVIVTSRASYEMVLKTASIGAGILA
CCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEHHCCCCCEEE
AVSGSTGLAARLAESAGVTLAGFVRGGTLVAYSHPQRLKLA
EECCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9756865 [H]