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The map label for this gene is yfgC [C]

Identifier: 94309432

GI number: 94309432

Start: 514576

End: 516393

Strand: Direct

Name: yfgC [C]

Synonym: Rmet_0487

Alternate gene names: 94309432

Gene position: 514576-516393 (Clockwise)

Preceding gene: 94309429

Following gene: 94309439

Centisome position: 13.1

GC content: 65.35

Gene sequence:

>1818_bases
ATGGGAACGTCATCCGCAGGCCGCTATCATAGCAACATGCCCAAGACCCTCCGGCCTTTCCGCCTGTCAGCCCGGCCGAG
TGCTCGCCCACTCGCAGCCGCCGCGCCAGCCTCGCGCGCATCACATATGACGCGTGCGCTGGCCGCCGTGCTGGTGCTGA
CAATGGCTGCTCCGGCGTGGCCTCAGGGCGTGCAGGGAACGGGCGCAAAGCCGGCAGGCACGACGAGTATTGCCCCAGCC
GCGCCACCCCCTCCAAGCGACGCCAGCGATCAGGTCTACGACAACCTCAACCGGAGCGTGCGGGCCGGCCAGAAGTCCGA
ATTCGGGCTGCGCAGCGCCAACACGGTGGTGGAGAGTTCAGGCAATCAGTTGCCCGATCTTGGTGATCCGTCGACGGCTT
CGCTGTCGCCGGATATGGAGAAGCGCCTCGGCGACCGGATCATGCGCGACATCCGCCGGGATCCCGACTATGTCTCCGAC
CCGCTTATGAACGACTACCTGAATGCGCTTGGTTACAGGCTCGTCCAGGCGGCCCGCCGGCAGAACATCTCGGGCTCGAA
CGGTTCGGGCACCTTTGCCACCGGCTTCGAGCTGTTTGGCGTGCGGGATCGCTCGATCAACGCCTTTGCCATGCCGGGCG
GCTACATCGGCGTGCATACCGGGCTGCTGGTGCAGTCGGAGACCGAATCCGAACTGGCGTCGGTGCTGGGGCACGAAATC
GGCCACGTGATGCAGCGGCACATTGCGCGCGGCATCACCAATCAGAACCAGTCGATGTGGATCGCGTTGGCCTCGATGGT
GCTGGCCGGCCTGGCCGCCACCAAGAGCGGCGATGCCGCGGCGGCGCTGGCGATGGGCGGGCAGGGCGCGGCCGTCGCGA
ACCTGCTTTCGTTTTCGCGCGGCGCCGAGCGCGAGGCTGACCGCGTTGGCTTCCAGATCATGACGGCGGCGGGATTCGAT
CCCCAGGGGATGCCCGACTTCTTTCAGCGTCTGCAACGCGTGATGGGCATTTCGGACAATTCCGTGCCGGCCTATGTGCG
TACCCACCCGCTGACTTCCGAACGTATCGCCGACATGCAGGACCGCGTGAGTCACGTGCCCCCGCACAAGATTCCGAACA
CGCCCGAGTACGAGTTCGCCCGCGCGCGGGCACGCGTGATTCAGGAGCCCACACCGAACGATGTGCGCAACGTGCTGGCC
GTCTTCCAGGCCCAGGTGAACAGCAACACGTCCGCGGTGCGACTGCCGGCGGTCTACTACGGCATCGCCTTCGCCAATCA
GCGGCTGGGCCGTTTTGCCGATGCCGAGAAGGCGCTTGCGGAGGCGCGTCGCCTCTACGGAAATATCCCGGGTGCGACGT
CGGGCAGTCCGATGCTGGATGTGATGGCGGTGGAACTAGCGCGTGCCGAGGGGAGGACGCAGGATGCGCTGACGCAGGCG
ATGGCCACGATGCGCGCGTTTCCGCTGTCTCACGCGGCGGCGCTGGCCTATGCCGACACGCTTGTCGCAGCGAACAAGCT
AGACGATGCCGTAGCGTTCCTGCGGTCCCGCACGCGCGAGGAAACCAGCCGATCCGAATGGTGGGAACTGCTCGCGCGTG
CCTACGCGGCGCAAGGCAAGCGCCTGCAGCAGCATCAGGCGATGGCCGAGAAGTATGCGATGGATGGCTCGTACCAGGCA
GCTATCGAACAACTCCAGATCGCGCGCAAGGCCGGTGATGGCGACTTCTACACGTTGTCCGAAGTCGATGCGCGTCTGCA
TCAGCTACAGCTTCAGTTCAAGGAAGAGAAGCAGGACAACAAGGGGATGCCGAACTGA

Upstream 100 bases:

>100_bases
CTTGTTGCCGACGTCGACCATATGGGCTTGTCCGGCGTTGTCGAAATGTGTGAGCTGGCTCATGGCGAAACAGGAGGAAA
TGTGTGCTGGGGCTTGCCCG

Downstream 100 bases:

>100_bases
TCGGCCTGGGTGATTGGCCCAGGCGTGGGGAGAGGAGAAAAGCCTTACTCGGCTACCGGCGTTCGCACAAAGCCATAGCG
CTTGGGTAATTCCGCTTCCG

Product: zinc metalloprotease, peptidase family M48

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 604

Protein sequence:

>605_residues
MGTSSAGRYHSNMPKTLRPFRLSARPSARPLAAAAPASRASHMTRALAAVLVLTMAAPAWPQGVQGTGAKPAGTTSIAPA
APPPPSDASDQVYDNLNRSVRAGQKSEFGLRSANTVVESSGNQLPDLGDPSTASLSPDMEKRLGDRIMRDIRRDPDYVSD
PLMNDYLNALGYRLVQAARRQNISGSNGSGTFATGFELFGVRDRSINAFAMPGGYIGVHTGLLVQSETESELASVLGHEI
GHVMQRHIARGITNQNQSMWIALASMVLAGLAATKSGDAAAALAMGGQGAAVANLLSFSRGAEREADRVGFQIMTAAGFD
PQGMPDFFQRLQRVMGISDNSVPAYVRTHPLTSERIADMQDRVSHVPPHKIPNTPEYEFARARARVIQEPTPNDVRNVLA
VFQAQVNSNTSAVRLPAVYYGIAFANQRLGRFADAEKALAEARRLYGNIPGATSGSPMLDVMAVELARAEGRTQDALTQA
MATMRAFPLSHAAALAYADTLVAANKLDDAVAFLRSRTREETSRSEWWELLARAYAAQGKRLQQHQAMAEKYAMDGSYQA
AIEQLQIARKAGDGDFYTLSEVDARLHQLQLQFKEEKQDNKGMPN

Sequences:

>Translated_605_residues
MGTSSAGRYHSNMPKTLRPFRLSARPSARPLAAAAPASRASHMTRALAAVLVLTMAAPAWPQGVQGTGAKPAGTTSIAPA
APPPPSDASDQVYDNLNRSVRAGQKSEFGLRSANTVVESSGNQLPDLGDPSTASLSPDMEKRLGDRIMRDIRRDPDYVSD
PLMNDYLNALGYRLVQAARRQNISGSNGSGTFATGFELFGVRDRSINAFAMPGGYIGVHTGLLVQSETESELASVLGHEI
GHVMQRHIARGITNQNQSMWIALASMVLAGLAATKSGDAAAALAMGGQGAAVANLLSFSRGAEREADRVGFQIMTAAGFD
PQGMPDFFQRLQRVMGISDNSVPAYVRTHPLTSERIADMQDRVSHVPPHKIPNTPEYEFARARARVIQEPTPNDVRNVLA
VFQAQVNSNTSAVRLPAVYYGIAFANQRLGRFADAEKALAEARRLYGNIPGATSGSPMLDVMAVELARAEGRTQDALTQA
MATMRAFPLSHAAALAYADTLVAANKLDDAVAFLRSRTREETSRSEWWELLARAYAAQGKRLQQHQAMAEKYAMDGSYQA
AIEQLQIARKAGDGDFYTLSEVDARLHQLQLQFKEEKQDNKGMPN
>Mature_604_residues
GTSSAGRYHSNMPKTLRPFRLSARPSARPLAAAAPASRASHMTRALAAVLVLTMAAPAWPQGVQGTGAKPAGTTSIAPAA
PPPPSDASDQVYDNLNRSVRAGQKSEFGLRSANTVVESSGNQLPDLGDPSTASLSPDMEKRLGDRIMRDIRRDPDYVSDP
LMNDYLNALGYRLVQAARRQNISGSNGSGTFATGFELFGVRDRSINAFAMPGGYIGVHTGLLVQSETESELASVLGHEIG
HVMQRHIARGITNQNQSMWIALASMVLAGLAATKSGDAAAALAMGGQGAAVANLLSFSRGAEREADRVGFQIMTAAGFDP
QGMPDFFQRLQRVMGISDNSVPAYVRTHPLTSERIADMQDRVSHVPPHKIPNTPEYEFARARARVIQEPTPNDVRNVLAV
FQAQVNSNTSAVRLPAVYYGIAFANQRLGRFADAEKALAEARRLYGNIPGATSGSPMLDVMAVELARAEGRTQDALTQAM
ATMRAFPLSHAAALAYADTLVAANKLDDAVAFLRSRTREETSRSEWWELLARAYAAQGKRLQQHQAMAEKYAMDGSYQAA
IEQLQIARKAGDGDFYTLSEVDARLHQLQLQFKEEKQDNKGMPN

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=444, Percent_Identity=30.1801801801802, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI87082185, Length=172, Percent_Identity=29.0697674418605, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 65281; Mature: 65150

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTSSAGRYHSNMPKTLRPFRLSARPSARPLAAAAPASRASHMTRALAAVLVLTMAAPAW
CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
PQGVQGTGAKPAGTTSIAPAAPPPPSDASDQVYDNLNRSVRAGQKSEFGLRSANTVVESS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHCC
GNQLPDLGDPSTASLSPDMEKRLGDRIMRDIRRDPDYVSDPLMNDYLNALGYRLVQAARR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHH
QNISGSNGSGTFATGFELFGVRDRSINAFAMPGGYIGVHTGLLVQSETESELASVLGHEI
CCCCCCCCCCCEECCEEEEEECCCCCCEEECCCCEEEHHCCEEEECCHHHHHHHHHHHHH
GHVMQRHIARGITNQNQSMWIALASMVLAGLAATKSGDAAAALAMGGQGAAVANLLSFSR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHC
GAEREADRVGFQIMTAAGFDPQGMPDFFQRLQRVMGISDNSVPAYVRTHPLTSERIADMQ
CCCHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH
DRVSHVPPHKIPNTPEYEFARARARVIQEPTPNDVRNVLAVFQAQVNSNTSAVRLPAVYY
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHH
GIAFANQRLGRFADAEKALAEARRLYGNIPGATSGSPMLDVMAVELARAEGRTQDALTQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
MATMRAFPLSHAAALAYADTLVAANKLDDAVAFLRSRTREETSRSEWWELLARAYAAQGK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLQQHQAMAEKYAMDGSYQAAIEQLQIARKAGDGDFYTLSEVDARLHQLQLQFKEEKQDN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
KGMPN
CCCCC
>Mature Secondary Structure 
GTSSAGRYHSNMPKTLRPFRLSARPSARPLAAAAPASRASHMTRALAAVLVLTMAAPAW
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
PQGVQGTGAKPAGTTSIAPAAPPPPSDASDQVYDNLNRSVRAGQKSEFGLRSANTVVESS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHCC
GNQLPDLGDPSTASLSPDMEKRLGDRIMRDIRRDPDYVSDPLMNDYLNALGYRLVQAARR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHH
QNISGSNGSGTFATGFELFGVRDRSINAFAMPGGYIGVHTGLLVQSETESELASVLGHEI
CCCCCCCCCCCEECCEEEEEECCCCCCEEECCCCEEEHHCCEEEECCHHHHHHHHHHHHH
GHVMQRHIARGITNQNQSMWIALASMVLAGLAATKSGDAAAALAMGGQGAAVANLLSFSR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHC
GAEREADRVGFQIMTAAGFDPQGMPDFFQRLQRVMGISDNSVPAYVRTHPLTSERIADMQ
CCCHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH
DRVSHVPPHKIPNTPEYEFARARARVIQEPTPNDVRNVLAVFQAQVNSNTSAVRLPAVYY
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHH
GIAFANQRLGRFADAEKALAEARRLYGNIPGATSGSPMLDVMAVELARAEGRTQDALTQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
MATMRAFPLSHAAALAYADTLVAANKLDDAVAFLRSRTREETSRSEWWELLARAYAAQGK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLQQHQAMAEKYAMDGSYQAAIEQLQIARKAGDGDFYTLSEVDARLHQLQLQFKEEKQDN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
KGMPN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]