Click here to switch to the map view.

The map label for this gene is ctpA [H]

Identifier: 94309195

GI number: 94309195

Start: 266028

End: 267635

Strand: Reverse

Name: ctpA [H]

Synonym: Rmet_0250

Alternate gene names: 94309195

Gene position: 267635-266028 (Counterclockwise)

Preceding gene: 335055482

Following gene: 94309194

Centisome position: 6.81

GC content: 64.43

Gene sequence:

>1608_bases
ATGCGTAAGACGCTCAAGAACATTAGCCTCGTCTCAATAGGCGTCGTTGCCGGCGTGCTCGCCACGCTGCAGATTTCGGC
GACCGCCCAGAATACGACCGGGCCGCTGCCGCTGGACCAGTTACGGCTGATGGCCGATATCTTCGGGCAGATCAAGCGCG
AGTACGTGGAGCCGGTCGACGACAAGAAGCTGCTGACCGAAGCCATCAAGGGCATGGTCGCCAGCCTCGACCCGCACTCG
GCCTACCTGGACGAGAAGGATTTCAAGGAACTGCAGGAAGGCACGCGCGGACGATTCGCCGGCCTGGGCATCGAGATTTC
CCAGGAAGAGGGCCTGGTCAAGGTCATCAACCCGATCGAGGACACGCCCGCGTTCCGCGCAGGCATCCAGCCGGGTGACC
TGATCACGCGGATCGACGACAAGCCGGTGCGCGGCCTGCCGCTGGAACAAGCGGTCAAGCGCATGCGCGGCGAGCCGGGG
ACCAAGGTCACGCTGACGATTTACCGCAAGAGCGAGGAACGCACGTTCCCGGTGTCGATCACGCGCGCGGAAATCCGCGT
GCAGTCGGTCAAGACCAAGATGCTCGACAACAACACCATCGGCTGGGTGCGCCTGACAAGCTTCCAGGAACGTACCGTGA
CCGATCTGGGCCGTCGCCTCAAGGAGATGGCTGATAAGAATCCGAACCTGCGCGGTATCGTGCTGGACCTCCGCAACAAC
GGTGGCGGCGTGCTGCAAGGCGCGGTAGGCGTGGCCGCGGCCTTCCTGCCCGAGGATTCGGTCGTGGTATCGACCAACGG
CCAGGTGCCGGATGCCAAGCGCGTCTACAAGGCGTCGTTCAGCAACTACCGCCTGTCGTCGCTCGAGGACGATCCGCTCA
AGGACCTGCCGGCAGAGTTCAAGAAGCTGCCGATGGTCGTGCTGACCAACGCCTACTCGGCGTCAGCATCGGAAATCGTG
GCCGGCGCGCTGCAGGACCACAAGCGCGCGACGCTCATGGGCAAGACGACGTTCGGCAAGGGCTCGGTCCAGACCGTTCG
CCCGCTGACCAACGACACCGGCATCAAGCTGACGATCGCGTACTACTACACGCCGTCGGGCAAGTCGATCCAGGCCAAGG
GCATCCGCCCGGATATCCCGGTCGACCAGAACCCCGATGGCGATCCGGACGACGCGCTGATCACGCGTGAAATCGACACC
GAACGCCACCTGCACAACAAGCAGGAGTCGGAAGAGCCGGAAATGGCCGAACGCGAGCAGCGCCGCGTGGAAGAACTGCG
CCGCCTGGAAGAAGAGAACGCCAAGAAGACGCCGGAAGAGCGCGAGAAGGAACGCAAGAAGAAGCCGGTGGAATTCGGTT
CTGCTGACGACTTCATGCTGCAGCAGGCCATCGCACAGCTCGACGGCAAGCCGGTGCAACGTTCGAAGTCGCGCCTGGAA
GCCACCGGCACGGCTGGCAAGCCGGACAGCTCCGACAACCCGAAGCCGGCCAGCAAGGCGCCCGCCAAACCGGCAGCCAA
GCCGGCGGCCCCGGCCAAGCCTTCCAGCCCGCCGCCCGCGAGTGCCCCGATCGGCGAACCGCTGGGTACGCCGACCGGCA
AGAAGTAA

Upstream 100 bases:

>100_bases
TTCTCCGCACCCTCTTATACTGTCGGTCAAATCCGCCCCCCGGGTCATCCCGGCACGGACCTGACCCTTGCACAAATCCT
CACACGTTCAGGCTGCCCTC

Downstream 100 bases:

>100_bases
CGGCAGGACGCGAGAAGCCCGCCGCGCGACACTGGCGCGTGGCGCTTCCCGCCTTCAGCCCTGCGGCCCGCGGTATTGCA
CCGGCGGGCCGTTTTTGTTT

Product: C-terminal processing peptidase

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MRKTLKNISLVSIGVVAGVLATLQISATAQNTTGPLPLDQLRLMADIFGQIKREYVEPVDDKKLLTEAIKGMVASLDPHS
AYLDEKDFKELQEGTRGRFAGLGIEISQEEGLVKVINPIEDTPAFRAGIQPGDLITRIDDKPVRGLPLEQAVKRMRGEPG
TKVTLTIYRKSEERTFPVSITRAEIRVQSVKTKMLDNNTIGWVRLTSFQERTVTDLGRRLKEMADKNPNLRGIVLDLRNN
GGGVLQGAVGVAAAFLPEDSVVVSTNGQVPDAKRVYKASFSNYRLSSLEDDPLKDLPAEFKKLPMVVLTNAYSASASEIV
AGALQDHKRATLMGKTTFGKGSVQTVRPLTNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDT
ERHLHNKQESEEPEMAEREQRRVEELRRLEEENAKKTPEEREKERKKKPVEFGSADDFMLQQAIAQLDGKPVQRSKSRLE
ATGTAGKPDSSDNPKPASKAPAKPAAKPAAPAKPSSPPPASAPIGEPLGTPTGKK

Sequences:

>Translated_535_residues
MRKTLKNISLVSIGVVAGVLATLQISATAQNTTGPLPLDQLRLMADIFGQIKREYVEPVDDKKLLTEAIKGMVASLDPHS
AYLDEKDFKELQEGTRGRFAGLGIEISQEEGLVKVINPIEDTPAFRAGIQPGDLITRIDDKPVRGLPLEQAVKRMRGEPG
TKVTLTIYRKSEERTFPVSITRAEIRVQSVKTKMLDNNTIGWVRLTSFQERTVTDLGRRLKEMADKNPNLRGIVLDLRNN
GGGVLQGAVGVAAAFLPEDSVVVSTNGQVPDAKRVYKASFSNYRLSSLEDDPLKDLPAEFKKLPMVVLTNAYSASASEIV
AGALQDHKRATLMGKTTFGKGSVQTVRPLTNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDT
ERHLHNKQESEEPEMAEREQRRVEELRRLEEENAKKTPEEREKERKKKPVEFGSADDFMLQQAIAQLDGKPVQRSKSRLE
ATGTAGKPDSSDNPKPASKAPAKPAAKPAAPAKPSSPPPASAPIGEPLGTPTGKK
>Mature_535_residues
MRKTLKNISLVSIGVVAGVLATLQISATAQNTTGPLPLDQLRLMADIFGQIKREYVEPVDDKKLLTEAIKGMVASLDPHS
AYLDEKDFKELQEGTRGRFAGLGIEISQEEGLVKVINPIEDTPAFRAGIQPGDLITRIDDKPVRGLPLEQAVKRMRGEPG
TKVTLTIYRKSEERTFPVSITRAEIRVQSVKTKMLDNNTIGWVRLTSFQERTVTDLGRRLKEMADKNPNLRGIVLDLRNN
GGGVLQGAVGVAAAFLPEDSVVVSTNGQVPDAKRVYKASFSNYRLSSLEDDPLKDLPAEFKKLPMVVLTNAYSASASEIV
AGALQDHKRATLMGKTTFGKGSVQTVRPLTNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDT
ERHLHNKQESEEPEMAEREQRRVEELRRLEEENAKKTPEEREKERKKKPVEFGSADDFMLQQAIAQLDGKPVQRSKSRLE
ATGTAGKPDSSDNPKPASKAPAKPAAKPAAPAKPSSPPPASAPIGEPLGTPTGKK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=397, Percent_Identity=27.7078085642317, Blast_Score=118, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 58473; Mature: 58473

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTLKNISLVSIGVVAGVLATLQISATAQNTTGPLPLDQLRLMADIFGQIKREYVEPVD
CCCCHHHCHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DKKLLTEAIKGMVASLDPHSAYLDEKDFKELQEGTRGRFAGLGIEISQEEGLVKVINPIE
HHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCCCEEECCEEECCCCCEEEECCCCC
DTPAFRAGIQPGDLITRIDDKPVRGLPLEQAVKRMRGEPGTKVTLTIYRKSEERTFPVSI
CCCHHHCCCCCCHHEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEE
TRAEIRVQSVKTKMLDNNTIGWVRLTSFQERTVTDLGRRLKEMADKNPNLRGIVLDLRNN
EHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
GGGVLQGAVGVAAAFLPEDSVVVSTNGQVPDAKRVYKASFSNYRLSSLEDDPLKDLPAEF
CCCEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
KKLPMVVLTNAYSASASEIVAGALQDHKRATLMGKTTFGKGSVQTVRPLTNDTGIKLTIA
HHCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCCCCCCCEEEEEE
YYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDTERHLHNKQESEEPEMAEREQ
EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCCHHHHHHH
RRVEELRRLEEENAKKTPEEREKERKKKPVEFGSADDFMLQQAIAQLDGKPVQRSKSRLE
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
ATGTAGKPDSSDNPKPASKAPAKPAAKPAAPAKPSSPPPASAPIGEPLGTPTGKK
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKTLKNISLVSIGVVAGVLATLQISATAQNTTGPLPLDQLRLMADIFGQIKREYVEPVD
CCCCHHHCHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DKKLLTEAIKGMVASLDPHSAYLDEKDFKELQEGTRGRFAGLGIEISQEEGLVKVINPIE
HHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCCCEEECCEEECCCCCEEEECCCCC
DTPAFRAGIQPGDLITRIDDKPVRGLPLEQAVKRMRGEPGTKVTLTIYRKSEERTFPVSI
CCCHHHCCCCCCHHEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEE
TRAEIRVQSVKTKMLDNNTIGWVRLTSFQERTVTDLGRRLKEMADKNPNLRGIVLDLRNN
EHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
GGGVLQGAVGVAAAFLPEDSVVVSTNGQVPDAKRVYKASFSNYRLSSLEDDPLKDLPAEF
CCCEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
KKLPMVVLTNAYSASASEIVAGALQDHKRATLMGKTTFGKGSVQTVRPLTNDTGIKLTIA
HHCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCCCCCCCEEEEEE
YYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDTERHLHNKQESEEPEMAEREQ
EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCCHHHHHHH
RRVEELRRLEEENAKKTPEEREKERKKKPVEFGSADDFMLQQAIAQLDGKPVQRSKSRLE
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
ATGTAGKPDSSDNPKPASKAPAKPAAKPAAPAKPSSPPPASAPIGEPLGTPTGKK
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]