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The map label for this gene is ybfI [H]

Identifier: 94308952

GI number: 94308952

Start: 11295

End: 12113

Strand: Reverse

Name: ybfI [H]

Synonym: Rmet_0007

Alternate gene names: 94308952

Gene position: 12113-11295 (Counterclockwise)

Preceding gene: 94308953

Following gene: 94308951

Centisome position: 0.31

GC content: 66.67

Gene sequence:

>819_bases
ATGGCCGGAGGCCAGTTCCAGATATTCCGCTGTCATGTTGCCGGCACACAGGCTGTGCAGGCCGACTCGCGCCACGCGTT
CGGTCGGCATACGCATGATCAGTTCGGCATCGGTGTGATCGGCAAGGGCGCGCAAAGATCGGCCAGCGGGCAGGGGATCG
TGGAGGCCGGCCCCGGCGACACGATCACGGTCAACCCTGGCGAAGTGCACGACGGCATGCCGATCGGCGATGCCGGCCGT
GCCTGGCAGATGCTCTATTTCGATCCACCCGTGGTCGCCGACGCGATCCTGGACGTGACGGAAGGGCGGACGCGGAGCTT
CGAGTTCGCCCACCCAGTCATGCGCGATGTGCGGCTCGCGCAACGCTTCCTGACACTGTTCACCGCCATGACGGCCGCGC
ACGCGGAACATGCCTCGGTGCTGCGCGAGGAATTGCTGCTCACCTTGCTGGCCGACACGATGCATGGGCAGACCCGCTCG
GACACACGCGGCCCGGGCTTCGCAGAGATCGCACTGGCGCGACGTCGCATCGACGACGATTCAGCCGCGCCGCTCACGCT
CGGCGAACTGGCCAACGAGTGCCGCCTGAGCCGCTTCCAGTTCATCCGCGCGTTCTCGCGGGCGACTGGCATGACACCAC
ACGCCTACATGATCCAGCGCCGCATCATCGCCGCACGGCATCTGATCGCGCGCCGCATGTCGCTCGCGGACGCTGCCGCA
GCGAGCGGCTTCGCCGACCAGAGCCATATGACGCGCATCTTTGTTCGCACGTACGGCATTTCGCCCAGCATGTACGCGCG
TGCCTGCGGCGCATCGTAG

Upstream 100 bases:

>100_bases
CTGCTGTACAACGTGTTCCTCGATCGCTTTGTCACCGCTTTCACCGTGGGCGCGATAAAGTAGCGGTGTCGCACGAATGG
CCAGACGAATGGGAGCGCAA

Downstream 100 bases:

>100_bases
CCGGCCTTCCCCGCCACGCTCGCAATTTCATTCAAGACGACACCGCGTCCGGTTCGCGATCCTGCACCTTTCCGCCATCC
CCCATCGGGGAAGAAAGGAA

Product: araC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MAGGQFQIFRCHVAGTQAVQADSRHAFGRHTHDQFGIGVIGKGAQRSASGQGIVEAGPGDTITVNPGEVHDGMPIGDAGR
AWQMLYFDPPVVADAILDVTEGRTRSFEFAHPVMRDVRLAQRFLTLFTAMTAAHAEHASVLREELLLTLLADTMHGQTRS
DTRGPGFAEIALARRRIDDDSAAPLTLGELANECRLSRFQFIRAFSRATGMTPHAYMIQRRIIAARHLIARRMSLADAAA
ASGFADQSHMTRIFVRTYGISPSMYARACGAS

Sequences:

>Translated_272_residues
MAGGQFQIFRCHVAGTQAVQADSRHAFGRHTHDQFGIGVIGKGAQRSASGQGIVEAGPGDTITVNPGEVHDGMPIGDAGR
AWQMLYFDPPVVADAILDVTEGRTRSFEFAHPVMRDVRLAQRFLTLFTAMTAAHAEHASVLREELLLTLLADTMHGQTRS
DTRGPGFAEIALARRRIDDDSAAPLTLGELANECRLSRFQFIRAFSRATGMTPHAYMIQRRIIAARHLIARRMSLADAAA
ASGFADQSHMTRIFVRTYGISPSMYARACGAS
>Mature_271_residues
AGGQFQIFRCHVAGTQAVQADSRHAFGRHTHDQFGIGVIGKGAQRSASGQGIVEAGPGDTITVNPGEVHDGMPIGDAGRA
WQMLYFDPPVVADAILDVTEGRTRSFEFAHPVMRDVRLAQRFLTLFTAMTAAHAEHASVLREELLLTLLADTMHGQTRSD
TRGPGFAEIALARRRIDDDSAAPLTLGELANECRLSRFQFIRAFSRATGMTPHAYMIQRRIIAARHLIARRMSLADAAAA
SGFADQSHMTRIFVRTYGISPSMYARACGAS

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29565; Mature: 29434

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGQFQIFRCHVAGTQAVQADSRHAFGRHTHDQFGIGVIGKGAQRSASGQGIVEAGPGD
CCCCCEEEEEEEECCCHHHHCCCCHHCCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCC
TITVNPGEVHDGMPIGDAGRAWQMLYFDPPVVADAILDVTEGRTRSFEFAHPVMRDVRLA
EEEECCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
QRFLTLFTAMTAAHAEHASVLREELLLTLLADTMHGQTRSDTRGPGFAEIALARRRIDDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
SAAPLTLGELANECRLSRFQFIRAFSRATGMTPHAYMIQRRIIAARHLIARRMSLADAAA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGFADQSHMTRIFVRTYGISPSMYARACGAS
HCCCCCHHHHHEEEEEEECCCHHHHHHHCCCC
>Mature Secondary Structure 
AGGQFQIFRCHVAGTQAVQADSRHAFGRHTHDQFGIGVIGKGAQRSASGQGIVEAGPGD
CCCCEEEEEEEECCCHHHHCCCCHHCCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCC
TITVNPGEVHDGMPIGDAGRAWQMLYFDPPVVADAILDVTEGRTRSFEFAHPVMRDVRLA
EEEECCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
QRFLTLFTAMTAAHAEHASVLREELLLTLLADTMHGQTRSDTRGPGFAEIALARRRIDDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
SAAPLTLGELANECRLSRFQFIRAFSRATGMTPHAYMIQRRIIAARHLIARRMSLADAAA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGFADQSHMTRIFVRTYGISPSMYARACGAS
HCCCCCHHHHHEEEEEEECCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]