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The map label for this gene is nqrD [H]

Identifier: 93007251

GI number: 93007251

Start: 3000689

End: 3001360

Strand: Direct

Name: nqrD [H]

Synonym: Pcryo_2427

Alternate gene names: 93007251

Gene position: 3000689-3001360 (Clockwise)

Preceding gene: 93007250

Following gene: 93007252

Centisome position: 98.07

GC content: 43.15

Gene sequence:

>672_bases
ATGGCTGATACAAAAAGTATTTTAACCTCGCCCATTTTTGATAATAACCCTATTGCTCTACAGATATTAGGTATCTGTTC
GGCATTGGCGGTAACGACCAGTGTAGCAAATGCACTAGTGATGAGCGTGGCATTGACCTTGGTCACAGCATTTTCAAGCT
TTTTTATCTCTATTATCCGTAAGCAAATCCCATCGAGTATTCGTATTATCGTGCAGATGACGATTATTGCTTCATTGGTT
ATCTTGGTCGATCAGATACTAAAAGCGGTCGCTTATGATGTCAGTAAAGGCTTGTCGGTATTTGTTGGTTTGATTATCAC
CAACTGTATCGTCATGGGACGTGCTGAAGCATTTGCCATGAGCAATCCGCCTATTCCAAGTTTCTTGGATGGTATCGGTA
ACGGTTTGGGTTATTCAGCCGTATTATTATTTGTCGCCAGTATTCGTGAAATCTTGGGTGCAGGCAGCTGGTTTGGTATC
ACCATTTTACAAACTGCGACCGACGGTGGCTGGTATGTACCAAATGGTTTATTGCTACTACCGCCGTCAGCATTCTTCAT
TATCGCCCTGTTTATCGTGATTATCCGTACATGGAAACCTGATCAGGTCGAAGATGCTGAATTTGTAATGAAGCCGCAAT
CTAAAGGCATGGCTCAAGGGGGCGGTCACTAA

Upstream 100 bases:

>100_bases
CCTTATAAAAAACTGGGTCAAAACTTACATCAACAGCAGGCGCATTCTGTAACCGAACTGGTAGCAGTGATACCAGCAGC
ACACGGCAAGGAGGCATAAC

Downstream 100 bases:

>100_bases
TGGGACATTATGTCAGTTTATTTATAACCTCGGTCTTTATCGAGAATATGGCGCTGGCCTACTTCTTAGGTATGTGTACC
TTTTTAGCGGTATCAAAAAA

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MADTKSILTSPIFDNNPIALQILGICSALAVTTSVANALVMSVALTLVTAFSSFFISIIRKQIPSSIRIIVQMTIIASLV
ILVDQILKAVAYDVSKGLSVFVGLIITNCIVMGRAEAFAMSNPPIPSFLDGIGNGLGYSAVLLFVASIREILGAGSWFGI
TILQTATDGGWYVPNGLLLLPPSAFFIIALFIVIIRTWKPDQVEDAEFVMKPQSKGMAQGGGH

Sequences:

>Translated_223_residues
MADTKSILTSPIFDNNPIALQILGICSALAVTTSVANALVMSVALTLVTAFSSFFISIIRKQIPSSIRIIVQMTIIASLV
ILVDQILKAVAYDVSKGLSVFVGLIITNCIVMGRAEAFAMSNPPIPSFLDGIGNGLGYSAVLLFVASIREILGAGSWFGI
TILQTATDGGWYVPNGLLLLPPSAFFIIALFIVIIRTWKPDQVEDAEFVMKPQSKGMAQGGGH
>Mature_222_residues
ADTKSILTSPIFDNNPIALQILGICSALAVTTSVANALVMSVALTLVTAFSSFFISIIRKQIPSSIRIIVQMTIIASLVI
LVDQILKAVAYDVSKGLSVFVGLIITNCIVMGRAEAFAMSNPPIPSFLDGIGNGLGYSAVLLFVASIREILGAGSWFGIT
ILQTATDGGWYVPNGLLLLPPSAFFIIALFIVIIRTWKPDQVEDAEFVMKPQSKGMAQGGGH

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=203, Percent_Identity=36.9458128078818, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 23675; Mature: 23544

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTKSILTSPIFDNNPIALQILGICSALAVTTSVANALVMSVALTLVTAFSSFFISIIR
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQIPSSIRIIVQMTIIASLVILVDQILKAVAYDVSKGLSVFVGLIITNCIVMGRAEAFAM
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
SNPPIPSFLDGIGNGLGYSAVLLFVASIREILGAGSWFGITILQTATDGGWYVPNGLLLL
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCEECCCCEEEE
PPSAFFIIALFIVIIRTWKPDQVEDAEFVMKPQSKGMAQGGGH
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADTKSILTSPIFDNNPIALQILGICSALAVTTSVANALVMSVALTLVTAFSSFFISIIR
CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQIPSSIRIIVQMTIIASLVILVDQILKAVAYDVSKGLSVFVGLIITNCIVMGRAEAFAM
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
SNPPIPSFLDGIGNGLGYSAVLLFVASIREILGAGSWFGITILQTATDGGWYVPNGLLLL
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCEECCCCEEEE
PPSAFFIIALFIVIIRTWKPDQVEDAEFVMKPQSKGMAQGGGH
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA