BacMap

Definition	Psychrobacter cryohalolentis K5 chromosome, complete genome.
Accession	NC_007969
Length	3,059,876

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The map label for this gene is yxbG [H]

Identifier: 93007233

GI number: 93007233

Start: 2966810

End: 2967622

Strand: Direct

Name: yxbG [H]

Synonym: Pcryo_2409

Alternate gene names: 93007233

Gene position: 2966810-2967622 (Clockwise)

Preceding gene: 93007231

Following gene: 93007234

Centisome position: 96.96

GC content: 42.93

Gene sequence:

>813_bases
ATGAAACGCTTTAAAGAGAAAACAGTCGTCGTAACAGGTGCCGACTCACATATCGGTCGTGCAACTGCCATTCGTTTTGC
GAATGAAGGTGCTAATGTCATACTCGTCGGACGCTCGACCGATACATTAAATCAAATCACTGAAGGGTTTCCACAAGACC
GTACATGGATTCATACCGACAACTTTTTAACCATTGCTTGTGACATTGGTGTTGAGAGCCAAGTACAAGAGATGATAAAA
AGAGTCATCGATAAGTTTGAATCAATCGATATATTGGTGAATAACGCAGCACAAACAACGCAAGGCAGAAATAGTGGGTT
ATCTACTGAACAGAAGAGTCCGGCTGTTGATGACTATTTAAGTGAAACCTTGTATGTCTGTCAGACGGCCATGCCTTACT
TAATACAGAGTAAAGGTAGTATCATTAACGTTCCTTCATTTGCAGCTTGTAGTAGCGATCAGAGTGCAGCGACTTATGAT
GCTGCCACCTCAGGTATTACTGATTTGACCCGTACGTTGGCTTCGGCACACAGCGCAGACGGCGTGCGCGTTAATGCAGT
AAATCCAAGCGTCACTCAGTCTGATATATCAGATGCGATTCAAAACACCGATATTCAAAATACTGATATAACAGATCTTC
AAGCAAATATAGATGAATCATCAGATAATAGTCCATTAGGACGCTGTGCCACACCAAACGATATTGCCGCGGTGATTACT
TTCTTAGCAAGCGATGATGCTGCCATGATTACTGGTACCAATTTGCCCGTCGATGGCGGTGTAAGCACTTCTAACCGTCA
GTTACCTTTATAA

Upstream 100 bases:

>100_bases
CGCGTATTGAGGAATCAATTAATACGCATGCTACTTTACAATATAATTAGCCCATTTATGTATCAAATAACTCTCTGATG
ATAACAAGGACTTGCCCATC

Downstream 100 bases:

>100_bases
GAAGTTTAGGTGTAATGGACATTTTTCATGCTGGCGTAGGGTCTAACGCTATATACTGTCTATATTTGCAAGGAATCAAC
GCCATGAATCAAAAAACTGC

Product: short-chain dehydrogenase/reductase SDR

Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKRFKEKTVVVTGADSHIGRATAIRFANEGANVILVGRSTDTLNQITEGFPQDRTWIHTDNFLTIACDIGVESQVQEMIK
RVIDKFESIDILVNNAAQTTQGRNSGLSTEQKSPAVDDYLSETLYVCQTAMPYLIQSKGSIINVPSFAACSSDQSAATYD
AATSGITDLTRTLASAHSADGVRVNAVNPSVTQSDISDAIQNTDIQNTDITDLQANIDESSDNSPLGRCATPNDIAAVIT
FLASDDAAMITGTNLPVDGGVSTSNRQLPL

Sequences:

>Translated_270_residues
MKRFKEKTVVVTGADSHIGRATAIRFANEGANVILVGRSTDTLNQITEGFPQDRTWIHTDNFLTIACDIGVESQVQEMIK
RVIDKFESIDILVNNAAQTTQGRNSGLSTEQKSPAVDDYLSETLYVCQTAMPYLIQSKGSIINVPSFAACSSDQSAATYD
AATSGITDLTRTLASAHSADGVRVNAVNPSVTQSDISDAIQNTDIQNTDITDLQANIDESSDNSPLGRCATPNDIAAVIT
FLASDDAAMITGTNLPVDGGVSTSNRQLPL
>Mature_270_residues
MKRFKEKTVVVTGADSHIGRATAIRFANEGANVILVGRSTDTLNQITEGFPQDRTWIHTDNFLTIACDIGVESQVQEMIK
RVIDKFESIDILVNNAAQTTQGRNSGLSTEQKSPAVDDYLSETLYVCQTAMPYLIQSKGSIINVPSFAACSSDQSAATYD
AATSGITDLTRTLASAHSADGVRVNAVNPSVTQSDISDAIQNTDIQNTDITDLQANIDESSDNSPLGRCATPNDIAAVIT
FLASDDAAMITGTNLPVDGGVSTSNRQLPL

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=268, Percent_Identity=27.2388059701493, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=27.9661016949153, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI5031737, Length=263, Percent_Identity=26.615969581749, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI40254992, Length=257, Percent_Identity=25.2918287937743, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=27.0676691729323, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=256, Percent_Identity=26.5625, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI32483357, Length=262, Percent_Identity=25.1908396946565, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI33667109, Length=205, Percent_Identity=26.3414634146341, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31542939, Length=208, Percent_Identity=28.3653846153846, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI66933014, Length=275, Percent_Identity=28, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787335, Length=259, Percent_Identity=28.1853281853282, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=27.8625954198473, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=30.5019305019305, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=24.5210727969349, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=25.6704980842912, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787905, Length=259, Percent_Identity=24.3243243243243, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367175, Length=262, Percent_Identity=26.3358778625954, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788459, Length=280, Percent_Identity=24.2857142857143, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=32.7205882352941, Blast_Score=127, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17560332, Length=276, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=31.1111111111111, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=273, Percent_Identity=32.967032967033, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=31.3432835820896, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=29.6296296296296, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=32.8413284132841, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17538480, Length=278, Percent_Identity=31.294964028777, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=32.3420074349442, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=31.0861423220974, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=32.5925925925926, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=29.1512915129151, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.5970149253731, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=274, Percent_Identity=29.9270072992701, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=30.4511278195489, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=29.8449612403101, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.8810408921933, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17563726, Length=272, Percent_Identity=31.25, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=30.0395256916996, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=268, Percent_Identity=28.3582089552239, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=27.3408239700375, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=271, Percent_Identity=28.4132841328413, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=264, Percent_Identity=28.7878787878788, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=23.6641221374046, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=27.3076923076923, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=27.4509803921569, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=26.2548262548263, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=27.7992277992278, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=26.4550264550265, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=206, Percent_Identity=25.7281553398058, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=32.6848249027237, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI21357041, Length=269, Percent_Identity=33.457249070632, Blast_Score=131, Evalue=6e-31,
Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=30.7692307692308, Blast_Score=123, Evalue=2e-28,
Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=29.6875, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=26.7924528301887, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24644337, Length=258, Percent_Identity=30.2325581395349, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=27.1317829457364, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=28.4916201117318, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100 [C]

Molecular weight: Translated: 28749; Mature: 28749

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFKEKTVVVTGADSHIGRATAIRFANEGANVILVGRSTDTLNQITEGFPQDRTWIHTD
CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHCCCCCCEEEEEC
NFLTIACDIGVESQVQEMIKRVIDKFESIDILVNNAAQTTQGRNSGLSTEQKSPAVDDYL
CEEEEEEECCCHHHHHHHHHHHHHHHHCEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHH
SETLYVCQTAMPYLIQSKGSIINVPSFAACSSDQSAATYDAATSGITDLTRTLASAHSAD
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC
GVRVNAVNPSVTQSDISDAIQNTDIQNTDITDLQANIDESSDNSPLGRCATPNDIAAVIT
CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHH
FLASDDAAMITGTNLPVDGGVSTSNRQLPL
HHCCCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRFKEKTVVVTGADSHIGRATAIRFANEGANVILVGRSTDTLNQITEGFPQDRTWIHTD
CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHCCCCCCEEEEEC
NFLTIACDIGVESQVQEMIKRVIDKFESIDILVNNAAQTTQGRNSGLSTEQKSPAVDDYL
CEEEEEEECCCHHHHHHHHHHHHHHHHCEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHH
SETLYVCQTAMPYLIQSKGSIINVPSFAACSSDQSAATYDAATSGITDLTRTLASAHSAD
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC
GVRVNAVNPSVTQSDISDAIQNTDIQNTDITDLQANIDESSDNSPLGRCATPNDIAAVIT
CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHH
FLASDDAAMITGTNLPVDGGVSTSNRQLPL
HHCCCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NADPH [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]

Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]