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The map label for this gene is ylbK [H]

Identifier: 93007227

GI number: 93007227

Start: 2958589

End: 2959596

Strand: Direct

Name: ylbK [H]

Synonym: Pcryo_2403

Alternate gene names: 93007227

Gene position: 2958589-2959596 (Clockwise)

Preceding gene: 93007221

Following gene: 93007229

Centisome position: 96.69

GC content: 44.15

Gene sequence:

>1008_bases
ATGTCCTCTCATTCTATCTGCCACCCTTATTATCATTTTTTATTGACGCTTCGTCTGAGCCTCTTCGCTATATTTGCTAT
ATTGATGAGTGCTTGCAATAGTTTGACGCCAGTCGCGCCAGCAGATACGTCAGTACCGAACAAACCTACGGTAGCTTTAG
TATTAGGTGGTGGCGGTGCAAAAGGTTTCGCTCATGTAGGCGTGATTAAAGCATTAGAAGAGAACGGTATCAAACCGACA
CTGGTAGTAGGCACCAGTGTCGGGAGCTTAGTTGGTAGCTTGTATGCCAGTGGTTATAATGCAAAGCAGCTTGAACACTT
GGCACTGACCACCATTGATAGTGAATTGACAGACTTTACCTTATCTAACCAAGGTTTTATCGAAGGTATTAAGCTCAAAA
ACTTTATTAACGCGAATGTTGGTGGACGAACGATAGAAAACTTCCCCATCTCCTTTGCGGCGGTTGCTGCTGATAAAAAC
ACGCTGAAAAAGACCGTATTTACCACCGGTGATGTTGGGCTTGCGGTACAAGCATCCTGTAGTGTGCCTAATATCTTTAT
TGCACCGCGCATCCCTGAAAAAGTCGGCAAAAAATATATTGATGGTGGCGTGGTCAGCTTAGTGCCTGTGGATAGCGCCC
GTGATTTAGGTGCCGATATTATTATCGCCGTTGATGTGACTGCTGCTAACGCTAGTACATCAACTGTCAATCAAAAACCG
AACCTCAATTCATTAACCAGCTTTTGGGGCTTTCTTGAAAATAGTTTAATCGCCAATGCAGTCTATAACGCGAAAGCATC
TCAGATTAATCATAGCGCTGCATCAATGCGTCATGAGCGTGATCGTGCTGATATTGTGATTATGCCAAATGTCGGTCATA
TCAGCTCGCTAGATACTAGCCAGCGTAGCGCTGTGATTGCTGCTGGCTCGCAAGCCACTACCGCCCAAATTCATGCCATT
AAGCAACTTATTAACGAAAAATCCAAGAGTAAATATGCCACTCTTTAA

Upstream 100 bases:

>100_bases
TTCGCCATACAACGTCTAGCTGATTTCTGCGTAACCTATTGAGGCATACCCTACTACACCTCTATTTATTCCTCTATGAT
AATTTTTGATAAGGTTTTTT

Downstream 100 bases:

>100_bases
TTTATAGTGGAAAAAGATATATAAAAAATCCTGATAACTACAGATATCAAAGATTGACGATAAAAAAAGCACCACAGTGA
TTGCTGCGGTGCTTTTTTGT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSSHSICHPYYHFLLTLRLSLFAIFAILMSACNSLTPVAPADTSVPNKPTVALVLGGGGAKGFAHVGVIKALEENGIKPT
LVVGTSVGSLVGSLYASGYNAKQLEHLALTTIDSELTDFTLSNQGFIEGIKLKNFINANVGGRTIENFPISFAAVAADKN
TLKKTVFTTGDVGLAVQASCSVPNIFIAPRIPEKVGKKYIDGGVVSLVPVDSARDLGADIIIAVDVTAANASTSTVNQKP
NLNSLTSFWGFLENSLIANAVYNAKASQINHSAASMRHERDRADIVIMPNVGHISSLDTSQRSAVIAAGSQATTAQIHAI
KQLINEKSKSKYATL

Sequences:

>Translated_335_residues
MSSHSICHPYYHFLLTLRLSLFAIFAILMSACNSLTPVAPADTSVPNKPTVALVLGGGGAKGFAHVGVIKALEENGIKPT
LVVGTSVGSLVGSLYASGYNAKQLEHLALTTIDSELTDFTLSNQGFIEGIKLKNFINANVGGRTIENFPISFAAVAADKN
TLKKTVFTTGDVGLAVQASCSVPNIFIAPRIPEKVGKKYIDGGVVSLVPVDSARDLGADIIIAVDVTAANASTSTVNQKP
NLNSLTSFWGFLENSLIANAVYNAKASQINHSAASMRHERDRADIVIMPNVGHISSLDTSQRSAVIAAGSQATTAQIHAI
KQLINEKSKSKYATL
>Mature_334_residues
SSHSICHPYYHFLLTLRLSLFAIFAILMSACNSLTPVAPADTSVPNKPTVALVLGGGGAKGFAHVGVIKALEENGIKPTL
VVGTSVGSLVGSLYASGYNAKQLEHLALTTIDSELTDFTLSNQGFIEGIKLKNFINANVGGRTIENFPISFAAVAADKNT
LKKTVFTTGDVGLAVQASCSVPNIFIAPRIPEKVGKKYIDGGVVSLVPVDSARDLGADIIIAVDVTAANASTSTVNQKPN
LNSLTSFWGFLENSLIANAVYNAKASQINHSAASMRHERDRADIVIMPNVGHISSLDTSQRSAVIAAGSQATTAQIHAIK
QLINEKSKSKYATL

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=206, Percent_Identity=32.0388349514563, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI260656043, Length=206, Percent_Identity=32.0388349514563, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI260656041, Length=206, Percent_Identity=32.0388349514563, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI116256487, Length=206, Percent_Identity=32.0388349514563, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI260656037, Length=206, Percent_Identity=32.0388349514563, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI148727290, Length=191, Percent_Identity=34.5549738219895, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI148727335, Length=191, Percent_Identity=34.5549738219895, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI226510936, Length=300, Percent_Identity=32.3333333333333, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71997299, Length=193, Percent_Identity=30.5699481865285, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71997289, Length=193, Percent_Identity=30.5699481865285, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204778, Length=202, Percent_Identity=24.2574257425743, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=205, Percent_Identity=33.1707317073171, Blast_Score=99, Evalue=7e-22,
Organism=Drosophila melanogaster, GI28571388, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281376913, Length=192, Percent_Identity=31.25, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 35250; Mature: 35118

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHSICHPYYHFLLTLRLSLFAIFAILMSACNSLTPVAPADTSVPNKPTVALVLGGGGA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCC
KGFAHVGVIKALEENGIKPTLVVGTSVGSLVGSLYASGYNAKQLEHLALTTIDSELTDFT
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHEEEECCHHHCEE
LSNQGFIEGIKLKNFINANVGGRTIENFPISFAAVAADKNTLKKTVFTTGDVGLAVQASC
ECCCCCEEEEEEHHEEECCCCCCEECCCCCEEEEEECCHHHHHHHEEECCCCCEEEEECC
SVPNIFIAPRIPEKVGKKYIDGGVVSLVPVDSARDLGADIIIAVDVTAANASTSTVNQKP
CCCCEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCC
NLNSLTSFWGFLENSLIANAVYNAKASQINHSAASMRHERDRADIVIMPNVGHISSLDTS
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
QRSAVIAAGSQATTAQIHAIKQLINEKSKSKYATL
CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSHSICHPYYHFLLTLRLSLFAIFAILMSACNSLTPVAPADTSVPNKPTVALVLGGGGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCC
KGFAHVGVIKALEENGIKPTLVVGTSVGSLVGSLYASGYNAKQLEHLALTTIDSELTDFT
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHEEEECCHHHCEE
LSNQGFIEGIKLKNFINANVGGRTIENFPISFAAVAADKNTLKKTVFTTGDVGLAVQASC
ECCCCCEEEEEEHHEEECCCCCCEECCCCCEEEEEECCHHHHHHHEEECCCCCEEEEECC
SVPNIFIAPRIPEKVGKKYIDGGVVSLVPVDSARDLGADIIIAVDVTAANASTSTVNQKP
CCCCEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCC
NLNSLTSFWGFLENSLIANAVYNAKASQINHSAASMRHERDRADIVIMPNVGHISSLDTS
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
QRSAVIAAGSQATTAQIHAIKQLINEKSKSKYATL
CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]