| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is helD [H]
Identifier: 93007184
GI number: 93007184
Start: 2892227
End: 2895094
Strand: Direct
Name: helD [H]
Synonym: Pcryo_2360
Alternate gene names: 93007184
Gene position: 2892227-2895094 (Clockwise)
Preceding gene: 93007183
Following gene: 93007185
Centisome position: 94.52
GC content: 39.54
Gene sequence:
>2868_bases ATGAGAGAGATTATTACCGTTGATCAATTAAATTTTAATTTTCTTGGCAAGATTTTTGGTAAAAAAGGCATCCGTCTGAC AGAGCAAGGCTTGCTTATAGACACTAAAAAAGGACCAACTGAGCTCATCTCTTTCGCTGAAGTTAAGAAGTTTGCTTATA TTGAAGAAGGATTCTTTGGCGCAACTCTATTTGTTCACAACAATCAATCATTGCGAGAACACAAATTTTTATCCAAAACT AACTCTACAGCGTTTTTAGAGTCTATCAACAAAAAGATTGCTCACTCATTACAACCCCATCTCCTTAACTTAATTGAAGA TTTTAACCTTCGAGTTTTGAGTAACTACCCTAGAGATTCTAAAATAGAACCAATTAAGTCATTAGCAGATGAGCTGTCTA TATTTTATAAAGATGCTAGGGTGCCATGGGATTACTTTAGCAACCCTAATCTGTTTAGCGAAGTTGAGAAGATACACAAC CTCTGCCCTATCAAACAAGAAACCTTAGGCGCGTATCATGAAAAAATCAATCTAGAACGAAGAAAGTCTTTTTTTGATAG CGTAGAGTCAAACCCGTTGACTGATGAGCAAAGACTAGGTGTACTTCGCTCTAATGATAAGAACATGGTACTGGCTGCTG CTGGCACAGGCAAAACCTCTGTAATAGTTGCCAAGGCCCTCGACCTTATTGATAGGGGACTAGCAGCACCTCAAGAGATT CTAGTTCTGGCTTACAATAAATCAGCTGCTGAAGAGTTAAAAAAACGGCTTGCTGATAAAGCTGAGAACTCAGGCATCGT ATTAACTGAATCCCCTCAAATTTCAACATTTCACGCTTTAGGTAGAAAAATCCTAGGGGATTCTGGTATCTCAACCTATA TGAGCGTCTTCACTGAAGACAGCTTAAAGCTTGGTGCGTGGGTAACAGAGTGGCTAATAGAGTATTTAACACAAGATCCC AAAAGAATGGTCGATTTTATATCGCTATTCCCAGAACCTGTGAATCCTTTCGACTTTAAGACTCAAGAAGAGTATGAGCG GCATATCAGAGACAATGAGTTTAGAACTCTCCAAGGCGAGTTGGTCAAAGGGTATCAGGAACTCAGGATAGCTAACTGGC TGGCTATTCATAAGATCGCATACGAATATGAAGCGCGTTATATCAGTAAGCGTAGAATTGACATAGGTTTTGACTACCAA CCTGATTTTCATATATCGGACTCTAATATTTACATCGAGCACTTCGGCATTGATAGGCATGGTAATACTCGACCAGATAT TGATAAGCAAGCATATGACGATTCTATAGATAGCAAACGTAAACTGCATAAAGAGCTTGAAACAGTTTTAGTGGAAACAT TCCATTATGACTGGACTGAAGATGCACTCGAAGCTCGTCTTGAAGAACGACTGGCTGCTGTTGGGGTTATTCCTGATAAA AACTCAGTTGAAGAGGCTTCAAAAGAATTACTCTCTAAACTCAAGGAAGGCAATCAAATTGCCACTTGGAGCAAAATGCT TATTAAGGCTTTACAAGCCACTCGATTTGAAAGGCTCAATGAAAACTCAATACTTGATAGACTAGAAAAAGCCGGCATCT CACAAGCAAAGAAAAAGACACGCATTCTGACTGACTTGCACAACGCGTATGTTGAAGAGCTTGTAGCTACTGATTCAATT GACTTTGACGATATGATTATTCGTGCAATCGCAGTTGTAGATAATGGTCAATATAAACCTCAATGGAGATATATTCTTGT TGATGAGTTTCAAGATATATCAGCTTCTCGGATGGAGTTTGTTAATAGTATTATTGAGAAAGGTCCTGATCCCTCATTAA CCGTTGTCGGTGATGATTGGCAGTCTATCTATCGATTTTCAGGTGGTAAACTTGAGCTCACCACTAGATTCAATGAGTTG GTTGGACCACACACGCTAACAATGCTCCAAAAGACCTTTCGCTATAACAATAGCATTGCTGATACTGCTGGGACGTTCAT CATGGAGAACCCTGAGCAGTATCAGAAACACATCAAAACACACGACGTGATTAATGAACCACAAGTATATTTACTAGATG ATAAGACTGGTGAAGAGAATGGTCTCTATAGTAGAGTAGCTGAGGTTGTCAGCAAGATTAGAGCAAATGACCCTGAGGGT TCAATAGCGATTATTGCTAGGTATAATTATTTGCTAAAAGATTCACGTGATTTTCTTGGTAAAGAAAATTCAAAAGGCAT CCATTTTTGGAGCTTTCACAAATCTAAAGGGCTTGAAGCTGACTATTGCATCTTAATTGGGTTTTTCCAAGGGAAAAGCG GCTTCCCTAATGGAAACCGCGAGGACGCTATTCCAGAAGCCCTACTTCCAACATTAGACTCATTCCCTCATTCTGAAGAA CGACGTTTGCTGTATGTTGGTATAACGCGCTGTAAAAAGAAATCGTATATTATTGCTAGTCCCACAGCGCCCTCAGAATT TGTTCTTGAATTACTGGCTCCCAAATATGACATCAACATTTTCTCTAAATCATTTCAAGAACGCCATAGAAAGATATTTA AATGCCCTAACTGCGTAAACGGCTACCTACGCTTAATCAAAGGGCAGTATGGCAGTTTCTATAGCTGTAGTTCTGGAAAA GGTTGTTCGGTAGGTAAGGCGCGCGTCTGCACGAAGTGTGAGGCACCATCTGTTGATAGAGAACATGAAAGCTTATGCAA CAATAGAGACTGTGGCAATTCAATGAAAATCTGTAATAAATGCGGTCGTCCCATGAAAATGCGTGAAAGCAAGTTTGGTA AATTCTGGGGCTGTAGCGGATATGGTATTCCTGATGATCAATGTAAAAATACAATCAAGATTCGCTAA
Upstream 100 bases:
>100_bases GTTACTGAAGTTTTTTATTCTTTTACTATAGACTGTATGCTCAGATTAAGGCGCATTCAAATAGACAAATATTTATTTTA GATACATGTGAGTAAGAAAG
Downstream 100 bases:
>100_bases GCAATATCTCAGTATTACAACCTGTTACTTAATCAGTTCATTATATTAATCGTCAAAAACTATTAGGTTTTTAGGTTAAG GCAAGAAAGTAACAGGAACG
Product: UvrD/REP helicase
Products: NA
Alternate protein names: 75 kDa helicase [H]
Number of amino acids: Translated: 955; Mature: 955
Protein sequence:
>955_residues MREIITVDQLNFNFLGKIFGKKGIRLTEQGLLIDTKKGPTELISFAEVKKFAYIEEGFFGATLFVHNNQSLREHKFLSKT NSTAFLESINKKIAHSLQPHLLNLIEDFNLRVLSNYPRDSKIEPIKSLADELSIFYKDARVPWDYFSNPNLFSEVEKIHN LCPIKQETLGAYHEKINLERRKSFFDSVESNPLTDEQRLGVLRSNDKNMVLAAAGTGKTSVIVAKALDLIDRGLAAPQEI LVLAYNKSAAEELKKRLADKAENSGIVLTESPQISTFHALGRKILGDSGISTYMSVFTEDSLKLGAWVTEWLIEYLTQDP KRMVDFISLFPEPVNPFDFKTQEEYERHIRDNEFRTLQGELVKGYQELRIANWLAIHKIAYEYEARYISKRRIDIGFDYQ PDFHISDSNIYIEHFGIDRHGNTRPDIDKQAYDDSIDSKRKLHKELETVLVETFHYDWTEDALEARLEERLAAVGVIPDK NSVEEASKELLSKLKEGNQIATWSKMLIKALQATRFERLNENSILDRLEKAGISQAKKKTRILTDLHNAYVEELVATDSI DFDDMIIRAIAVVDNGQYKPQWRYILVDEFQDISASRMEFVNSIIEKGPDPSLTVVGDDWQSIYRFSGGKLELTTRFNEL VGPHTLTMLQKTFRYNNSIADTAGTFIMENPEQYQKHIKTHDVINEPQVYLLDDKTGEENGLYSRVAEVVSKIRANDPEG SIAIIARYNYLLKDSRDFLGKENSKGIHFWSFHKSKGLEADYCILIGFFQGKSGFPNGNREDAIPEALLPTLDSFPHSEE RRLLYVGITRCKKKSYIIASPTAPSEFVLELLAPKYDINIFSKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGK GCSVGKARVCTKCEAPSVDREHESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNTIKIR
Sequences:
>Translated_955_residues MREIITVDQLNFNFLGKIFGKKGIRLTEQGLLIDTKKGPTELISFAEVKKFAYIEEGFFGATLFVHNNQSLREHKFLSKT NSTAFLESINKKIAHSLQPHLLNLIEDFNLRVLSNYPRDSKIEPIKSLADELSIFYKDARVPWDYFSNPNLFSEVEKIHN LCPIKQETLGAYHEKINLERRKSFFDSVESNPLTDEQRLGVLRSNDKNMVLAAAGTGKTSVIVAKALDLIDRGLAAPQEI LVLAYNKSAAEELKKRLADKAENSGIVLTESPQISTFHALGRKILGDSGISTYMSVFTEDSLKLGAWVTEWLIEYLTQDP KRMVDFISLFPEPVNPFDFKTQEEYERHIRDNEFRTLQGELVKGYQELRIANWLAIHKIAYEYEARYISKRRIDIGFDYQ PDFHISDSNIYIEHFGIDRHGNTRPDIDKQAYDDSIDSKRKLHKELETVLVETFHYDWTEDALEARLEERLAAVGVIPDK NSVEEASKELLSKLKEGNQIATWSKMLIKALQATRFERLNENSILDRLEKAGISQAKKKTRILTDLHNAYVEELVATDSI DFDDMIIRAIAVVDNGQYKPQWRYILVDEFQDISASRMEFVNSIIEKGPDPSLTVVGDDWQSIYRFSGGKLELTTRFNEL VGPHTLTMLQKTFRYNNSIADTAGTFIMENPEQYQKHIKTHDVINEPQVYLLDDKTGEENGLYSRVAEVVSKIRANDPEG SIAIIARYNYLLKDSRDFLGKENSKGIHFWSFHKSKGLEADYCILIGFFQGKSGFPNGNREDAIPEALLPTLDSFPHSEE RRLLYVGITRCKKKSYIIASPTAPSEFVLELLAPKYDINIFSKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGK GCSVGKARVCTKCEAPSVDREHESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNTIKIR >Mature_955_residues MREIITVDQLNFNFLGKIFGKKGIRLTEQGLLIDTKKGPTELISFAEVKKFAYIEEGFFGATLFVHNNQSLREHKFLSKT NSTAFLESINKKIAHSLQPHLLNLIEDFNLRVLSNYPRDSKIEPIKSLADELSIFYKDARVPWDYFSNPNLFSEVEKIHN LCPIKQETLGAYHEKINLERRKSFFDSVESNPLTDEQRLGVLRSNDKNMVLAAAGTGKTSVIVAKALDLIDRGLAAPQEI LVLAYNKSAAEELKKRLADKAENSGIVLTESPQISTFHALGRKILGDSGISTYMSVFTEDSLKLGAWVTEWLIEYLTQDP KRMVDFISLFPEPVNPFDFKTQEEYERHIRDNEFRTLQGELVKGYQELRIANWLAIHKIAYEYEARYISKRRIDIGFDYQ PDFHISDSNIYIEHFGIDRHGNTRPDIDKQAYDDSIDSKRKLHKELETVLVETFHYDWTEDALEARLEERLAAVGVIPDK NSVEEASKELLSKLKEGNQIATWSKMLIKALQATRFERLNENSILDRLEKAGISQAKKKTRILTDLHNAYVEELVATDSI DFDDMIIRAIAVVDNGQYKPQWRYILVDEFQDISASRMEFVNSIIEKGPDPSLTVVGDDWQSIYRFSGGKLELTTRFNEL VGPHTLTMLQKTFRYNNSIADTAGTFIMENPEQYQKHIKTHDVINEPQVYLLDDKTGEENGLYSRVAEVVSKIRANDPEG SIAIIARYNYLLKDSRDFLGKENSKGIHFWSFHKSKGLEADYCILIGFFQGKSGFPNGNREDAIPEALLPTLDSFPHSEE RRLLYVGITRCKKKSYIIASPTAPSEFVLELLAPKYDINIFSKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGK GCSVGKARVCTKCEAPSVDREHESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNTIKIR
Specific function: Helicase IV catalyzes the unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand in a reaction that is dependent upon the hydrolysis of ATP [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787196, Length=293, Percent_Identity=36.1774744027304, Blast_Score=199, Evalue=5e-52, Organism=Escherichia coli, GI48994965, Length=241, Percent_Identity=26.5560165975104, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 - InterPro: IPR022161 - InterPro: IPR003661 [H]
Pfam domain/function: PF12462 Nucleolin_N; PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 109175; Mature: 109175
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREIITVDQLNFNFLGKIFGKKGIRLTEQGLLIDTKKGPTELISFAEVKKFAYIEEGFFG CCCEEEECCCCHHHHHHHHCCCCCEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCE ATLFVHNNQSLREHKFLSKTNSTAFLESINKKIAHSLQPHLLNLIEDFNLRVLSNYPRDS EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC KIEPIKSLADELSIFYKDARVPWDYFSNPNLFSEVEKIHNLCPIKQETLGAYHEKINLER CCCHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH RKSFFDSVESNPLTDEQRLGVLRSNDKNMVLAAAGTGKTSVIVAKALDLIDRGLAAPQEI HHHHHHHHCCCCCCCHHHCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEE LVLAYNKSAAEELKKRLADKAENSGIVLTESPQISTFHALGRKILGDSGISTYMSVFTED EEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC SLKLGAWVTEWLIEYLTQDPKRMVDFISLFPEPVNPFDFKTQEEYERHIRDNEFRTLQGE CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHH LVKGYQELRIANWLAIHKIAYEYEARYISKRRIDIGFDYQPDFHISDSNIYIEHFGIDRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEECCCEEEEEEECCCCC GNTRPDIDKQAYDDSIDSKRKLHKELETVLVETFHYDWTEDALEARLEERLAAVGVIPDK CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC NSVEEASKELLSKLKEGNQIATWSKMLIKALQATRFERLNENSILDRLEKAGISQAKKKT CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHH RILTDLHNAYVEELVATDSIDFDDMIIRAIAVVDNGQYKPQWRYILVDEFQDISASRMEF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHH VNSIIEKGPDPSLTVVGDDWQSIYRFSGGKLELTTRFNELVGPHTLTMLQKTFRYNNSIA HHHHHHCCCCCCEEEECCCHHHHHHCCCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCCHH DTAGTFIMENPEQYQKHIKTHDVINEPQVYLLDDKTGEENGLYSRVAEVVSKIRANDPEG HHHCCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC SIAIIARYNYLLKDSRDFLGKENSKGIHFWSFHKSKGLEADYCILIGFFQGKSGFPNGNR CEEEEEECHHHHHCCHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCC EDAIPEALLPTLDSFPHSEERRLLYVGITRCKKKSYIIASPTAPSEFVLELLAPKYDINI CCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHH FSKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGKGCSVGKARVCTKCEAPSVDR HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCC EHESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNTIKIR HHHHHCCCCCCCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCCEECC >Mature Secondary Structure MREIITVDQLNFNFLGKIFGKKGIRLTEQGLLIDTKKGPTELISFAEVKKFAYIEEGFFG CCCEEEECCCCHHHHHHHHCCCCCEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCE ATLFVHNNQSLREHKFLSKTNSTAFLESINKKIAHSLQPHLLNLIEDFNLRVLSNYPRDS EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC KIEPIKSLADELSIFYKDARVPWDYFSNPNLFSEVEKIHNLCPIKQETLGAYHEKINLER CCCHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH RKSFFDSVESNPLTDEQRLGVLRSNDKNMVLAAAGTGKTSVIVAKALDLIDRGLAAPQEI HHHHHHHHCCCCCCCHHHCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEE LVLAYNKSAAEELKKRLADKAENSGIVLTESPQISTFHALGRKILGDSGISTYMSVFTED EEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC SLKLGAWVTEWLIEYLTQDPKRMVDFISLFPEPVNPFDFKTQEEYERHIRDNEFRTLQGE CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHH LVKGYQELRIANWLAIHKIAYEYEARYISKRRIDIGFDYQPDFHISDSNIYIEHFGIDRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEECCCEEEEEEECCCCC GNTRPDIDKQAYDDSIDSKRKLHKELETVLVETFHYDWTEDALEARLEERLAAVGVIPDK CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC NSVEEASKELLSKLKEGNQIATWSKMLIKALQATRFERLNENSILDRLEKAGISQAKKKT CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHH RILTDLHNAYVEELVATDSIDFDDMIIRAIAVVDNGQYKPQWRYILVDEFQDISASRMEF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHH VNSIIEKGPDPSLTVVGDDWQSIYRFSGGKLELTTRFNELVGPHTLTMLQKTFRYNNSIA HHHHHHCCCCCCEEEECCCHHHHHHCCCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCCHH DTAGTFIMENPEQYQKHIKTHDVINEPQVYLLDDKTGEENGLYSRVAEVVSKIRANDPEG HHHCCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC SIAIIARYNYLLKDSRDFLGKENSKGIHFWSFHKSKGLEADYCILIGFFQGKSGFPNGNR CEEEEEECHHHHHCCHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCC EDAIPEALLPTLDSFPHSEERRLLYVGITRCKKKSYIIASPTAPSEFVLELLAPKYDINI CCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHH FSKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGKGCSVGKARVCTKCEAPSVDR HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCC EHESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNTIKIR HHHHHCCCCCCCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2542273; 8905232; 9278503 [H]