| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is popC [H]
Identifier: 93007183
GI number: 93007183
Start: 2890612
End: 2891502
Strand: Direct
Name: popC [H]
Synonym: Pcryo_2359
Alternate gene names: 93007183
Gene position: 2890612-2891502 (Clockwise)
Preceding gene: 93007182
Following gene: 93007184
Centisome position: 94.47
GC content: 33.56
Gene sequence:
>891_bases ATGCAATTATCTAAACGTGAGCATATAGCCCTTGAGCTATTGAAAACTAAAAACTTTTCTACAAAAAAATCTTTTAAACT TGCTGATGAATTCAGCATCTCTTCACTTGATGTTGATCATCCTATTTCAGAAGACTGTGACCTTAAGAAAATATGGCAAT GGGCAGATGAGTTTAATATCCCTGAAAGCGAGATTCCTCGTAATAAAGATCAGTTGCTATCAATGAGTCATTTGCAAATA CTAAGAGATTACGATGGTAATTCTCGCTGCCTAACCTACTTGCCTGAAGCTATTGGGATACTAGTCAATTTAAAGCAAAT TCATTTATTAAATCATGAGCTAACTAAACTACCTGATAGCATTGGTAACTTAAAGAAGCTAATGTTCATATCTGTTGATC GTAACAATCTAACAGAATTACCTGATAGCATATGCAAACTTAGAAAATTACAAGTTCTCACTGCAACAAGAAATTCGTTA ATTAAGTTACCTAATGAAATTGGGAGCTTAATGAGTTTGCAACTAATTGAACTAGCAGGCAATAAACTGAATAAACTACC ATCTAGTATTACTCATTTGACTGAGCTAGAAATACTTGACATTAGATGGAATCGACTAACTGAGCTACCCGATACTATAG GTCAGCTATCAGAATTACAAGAACTTCACATTGAAGAAAACTTCCTAACGAATCTGCCTGATAGCATTGGTGAGCTATCC TACCTAGAAGAGATTCACTTTGACAATAATCATATAACAAGAGTTCCTGAAGGTATCTGCAATCTTAAAAGAATTAATAC CTTAGTCTTGGATAATAGCATATTCGAGAATTCGTCTAATTCAGTTAAGGGTTTTTTAAATGGCATAGAGAGTTTTGAGA AAAAATTATAG
Upstream 100 bases:
>100_bases TTTAAGCGTTTTATGACAAGTGTTGAAATGAGTGTAAAAGAGTGGATAAAAAATACACTAAAGAATCGTAGCAAAAGGTT AAAAACAACGAGAGTAAGCC
Downstream 100 bases:
>100_bases TGATAAGACCTAACTAATATAAAAAGGCGAGTCAATCTAAATGACTCGCCTTTTATCATAACTTCTCTAACAAAATTATG AGTCGCAACAGCTTTCAAAA
Product: leucine-rich repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MQLSKREHIALELLKTKNFSTKKSFKLADEFSISSLDVDHPISEDCDLKKIWQWADEFNIPESEIPRNKDQLLSMSHLQI LRDYDGNSRCLTYLPEAIGILVNLKQIHLLNHELTKLPDSIGNLKKLMFISVDRNNLTELPDSICKLRKLQVLTATRNSL IKLPNEIGSLMSLQLIELAGNKLNKLPSSITHLTELEILDIRWNRLTELPDTIGQLSELQELHIEENFLTNLPDSIGELS YLEEIHFDNNHITRVPEGICNLKRINTLVLDNSIFENSSNSVKGFLNGIESFEKKL
Sequences:
>Translated_296_residues MQLSKREHIALELLKTKNFSTKKSFKLADEFSISSLDVDHPISEDCDLKKIWQWADEFNIPESEIPRNKDQLLSMSHLQI LRDYDGNSRCLTYLPEAIGILVNLKQIHLLNHELTKLPDSIGNLKKLMFISVDRNNLTELPDSICKLRKLQVLTATRNSL IKLPNEIGSLMSLQLIELAGNKLNKLPSSITHLTELEILDIRWNRLTELPDTIGQLSELQELHIEENFLTNLPDSIGELS YLEEIHFDNNHITRVPEGICNLKRINTLVLDNSIFENSSNSVKGFLNGIESFEKKL >Mature_296_residues MQLSKREHIALELLKTKNFSTKKSFKLADEFSISSLDVDHPISEDCDLKKIWQWADEFNIPESEIPRNKDQLLSMSHLQI LRDYDGNSRCLTYLPEAIGILVNLKQIHLLNHELTKLPDSIGNLKKLMFISVDRNNLTELPDSICKLRKLQVLTATRNSL IKLPNEIGSLMSLQLIELAGNKLNKLPSSITHLTELEILDIRWNRLTELPDTIGQLSELQELHIEENFLTNLPDSIGELS YLEEIHFDNNHITRVPEGICNLKRINTLVLDNSIFENSSNSVKGFLNGIESFEKKL
Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]
COG id: COG4886
COG function: function code S; Leucine-rich repeat (LRR) protein
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 22 LRR (leucine-rich) repeats [H]
Homologues:
Organism=Homo sapiens, GI95113664, Length=214, Percent_Identity=37.3831775700935, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI45827731, Length=263, Percent_Identity=34.2205323193916, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI45827729, Length=263, Percent_Identity=34.2205323193916, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI110825984, Length=199, Percent_Identity=33.6683417085427, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI55770895, Length=273, Percent_Identity=31.1355311355311, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI8923909, Length=273, Percent_Identity=31.1355311355311, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI41281398, Length=210, Percent_Identity=35.7142857142857, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI16904383, Length=211, Percent_Identity=33.175355450237, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI30181233, Length=167, Percent_Identity=35.9281437125749, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI122937315, Length=226, Percent_Identity=30.5309734513274, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI6912638, Length=184, Percent_Identity=35.3260869565217, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI194394161, Length=192, Percent_Identity=31.7708333333333, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI14249428, Length=170, Percent_Identity=34.1176470588235, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI21389431, Length=185, Percent_Identity=31.8918918918919, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI34577083, Length=148, Percent_Identity=38.5135135135135, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI238908508, Length=179, Percent_Identity=30.7262569832402, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI63003903, Length=181, Percent_Identity=29.8342541436464, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI61742786, Length=166, Percent_Identity=31.9277108433735, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI61742784, Length=166, Percent_Identity=31.9277108433735, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI53729363, Length=162, Percent_Identity=32.0987654320988, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI53729359, Length=162, Percent_Identity=32.0987654320988, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI53729361, Length=162, Percent_Identity=32.0987654320988, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI299758423, Length=162, Percent_Identity=32.0987654320988, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI197333706, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI34222199, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI187829877, Length=171, Percent_Identity=32.7485380116959, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI62241040, Length=171, Percent_Identity=32.7485380116959, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI187829871, Length=171, Percent_Identity=32.7485380116959, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI190014581, Length=200, Percent_Identity=28.5, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI154091020, Length=170, Percent_Identity=32.3529411764706, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI157743290, Length=173, Percent_Identity=28.3236994219653, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI256017174, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI33859670, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI256017180, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI21361633, Length=239, Percent_Identity=29.2887029288703, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI167466264, Length=156, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI40217803, Length=214, Percent_Identity=25.2336448598131, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI90991702, Length=204, Percent_Identity=30.8823529411765, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI4503743, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI19923729, Length=194, Percent_Identity=26.8041237113402, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI197333692, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI21245134, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI33285015, Length=172, Percent_Identity=31.3953488372093, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI223005922, Length=191, Percent_Identity=28.7958115183246, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI153792305, Length=172, Percent_Identity=29.0697674418605, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI291219891, Length=225, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI65301141, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI193788651, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI62912470, Length=186, Percent_Identity=30.6451612903226, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI62912472, Length=186, Percent_Identity=30.6451612903226, Blast_Score=65, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71991531, Length=199, Percent_Identity=38.1909547738693, Blast_Score=121, Evalue=5e-28, Organism=Caenorhabditis elegans, GI71991525, Length=199, Percent_Identity=38.1909547738693, Blast_Score=120, Evalue=6e-28, Organism=Caenorhabditis elegans, GI71981152, Length=182, Percent_Identity=35.1648351648352, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI71981160, Length=182, Percent_Identity=35.1648351648352, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI71993778, Length=166, Percent_Identity=37.3493975903614, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71993783, Length=166, Percent_Identity=37.3493975903614, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17552452, Length=178, Percent_Identity=34.2696629213483, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI25143890, Length=149, Percent_Identity=35.5704697986577, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17537883, Length=174, Percent_Identity=31.0344827586207, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71998904, Length=175, Percent_Identity=29.7142857142857, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71998900, Length=167, Percent_Identity=31.7365269461078, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17510303, Length=228, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322455, Length=189, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007092, Length=185, Percent_Identity=39.4594594594595, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI281362655, Length=185, Percent_Identity=39.4594594594595, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI281362651, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24650334, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24650332, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24650336, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI281362653, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI281362657, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI24650330, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI62472958, Length=185, Percent_Identity=39.4594594594595, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI19922294, Length=182, Percent_Identity=32.967032967033, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI221379725, Length=199, Percent_Identity=30.6532663316583, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI221379722, Length=199, Percent_Identity=30.6532663316583, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI19922706, Length=210, Percent_Identity=31.9047619047619, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI161078262, Length=189, Percent_Identity=32.2751322751323, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI161078260, Length=189, Percent_Identity=32.2751322751323, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI17933612, Length=182, Percent_Identity=32.967032967033, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI45551891, Length=189, Percent_Identity=32.2751322751323, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI161078264, Length=189, Percent_Identity=32.2751322751323, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI21358045, Length=189, Percent_Identity=32.2751322751323, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI45550188, Length=128, Percent_Identity=35.9375, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI18858105, Length=174, Percent_Identity=27.0114942528736, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24584802, Length=168, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24584804, Length=168, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI17648023, Length=252, Percent_Identity=29.3650793650794, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641036, Length=203, Percent_Identity=28.0788177339901, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI19922622, Length=167, Percent_Identity=29.940119760479, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001611 [H]
Pfam domain/function: PF00560 LRR_1 [H]
EC number: NA
Molecular weight: Translated: 33918; Mature: 33918
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLSKREHIALELLKTKNFSTKKSFKLADEFSISSLDVDHPISEDCDLKKIWQWADEFNI CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC PESEIPRNKDQLLSMSHLQILRDYDGNSRCLTYLPEAIGILVNLKQIHLLNHELTKLPDS CHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH IGNLKKLMFISVDRNNLTELPDSICKLRKLQVLTATRNSLIKLPNEIGSLMSLQLIELAG HHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC NKLNKLPSSITHLTELEILDIRWNRLTELPDTIGQLSELQELHIEENFLTNLPDSIGELS HHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH YLEEIHFDNNHITRVPEGICNLKRINTLVLDNSIFENSSNSVKGFLNGIESFEKKL HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MQLSKREHIALELLKTKNFSTKKSFKLADEFSISSLDVDHPISEDCDLKKIWQWADEFNI CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC PESEIPRNKDQLLSMSHLQILRDYDGNSRCLTYLPEAIGILVNLKQIHLLNHELTKLPDS CHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH IGNLKKLMFISVDRNNLTELPDSICKLRKLQVLTATRNSLIKLPNEIGSLMSLQLIELAG HHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC NKLNKLPSSITHLTELEILDIRWNRLTELPDTIGQLSELQELHIEENFLTNLPDSIGELS HHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH YLEEIHFDNNHITRVPEGICNLKRINTLVLDNSIFENSSNSVKGFLNGIESFEKKL HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10792715; 11823852 [H]