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The map label for this gene is rimM [H]

Identifier: 93007145

GI number: 93007145

Start: 2849778

End: 2850311

Strand: Reverse

Name: rimM [H]

Synonym: Pcryo_2321

Alternate gene names: 93007145

Gene position: 2850311-2849778 (Counterclockwise)

Preceding gene: 93007146

Following gene: 93007144

Centisome position: 93.15

GC content: 47.19

Gene sequence:

>534_bases
ATGTCGTCTGCTCCAAACGCTAGTGCCCTTATGAAAATTGGTCAGCTCAAAAAGCCTTATGGCATCAAAGGTTGGCTTTG
GGTATTTAGTGAAACAGACGATCGTACGGCGATATTTGACATCAAGCCTTGGTGGATGAAAACCGCTACCGGTATGAAAC
CTTTGACAGTAAAGGCTTGGCGTGAGCAAGGCACAGGAATTGTGGCTCAGTTTGAGCAGATTCCTGATCGCAATGTTGCT
GAGACCATGAATGGGGTAACTCTTTGGGTCGAGCAAGACATCTTGCCAGAACCTGCTGAGGATGAATACTATTGGTCGGA
TTTGGTCAGCCTGCGCGTGATGAACGAGCAGGATGAATATCTAGGCGATATTACTGAGATGTTTGAAACTGGCGCCCACG
CTATTATGCGGGTTGCGGCAACGACAGACAGCTTGGATAAAGAAGAGCGCCTAATTCCATGGCACAAGCAAACTGTAGTG
AAAGTCGATCTGACTGAAAAGACAGTGCTAGTGGCATGGCCAAGTGACTATTAA

Upstream 100 bases:

>100_bases
AGGGTACGCCATTAACTGTTTATCGCTTTTGACGACGTTTATCGTTTTTAATAGCTTTTTATTTATCATCGCTGTTTTTA
TCATTGTTAGGTTAGCCGTT

Downstream 100 bases:

>100_bases
TAAGCCATTATTAATCAGTAAGGGTTAATAAGAAATTATTAAAACAAGCTTTAGTGGTATAAGCTTTAACTTTATCGCTT
AAGATTGTTAATAGTAGTAC

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSSAPNASALMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVAQFEQIPDRNVA
ETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQDEYLGDITEMFETGAHAIMRVAATTDSLDKEERLIPWHKQTVV
KVDLTEKTVLVAWPSDY

Sequences:

>Translated_177_residues
MSSAPNASALMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVAQFEQIPDRNVA
ETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQDEYLGDITEMFETGAHAIMRVAATTDSLDKEERLIPWHKQTVV
KVDLTEKTVLVAWPSDY
>Mature_176_residues
SSAPNASALMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVAQFEQIPDRNVAE
TMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQDEYLGDITEMFETGAHAIMRVAATTDSLDKEERLIPWHKQTVVK
VDLTEKTVLVAWPSDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=163, Percent_Identity=31.9018404907975, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20270; Mature: 20139

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAPNASALMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAW
CCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHCCCCCCEEEEEH
REQGTGIVAQFEQIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQDEY
HHCCCCEEEHHHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHEEEEECCCHHH
LGDITEMFETGAHAIMRVAATTDSLDKEERLIPWHKQTVVKVDLTEKTVLVAWPSDY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCC
>Mature Secondary Structure 
SSAPNASALMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAW
CCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHCCCCCCEEEEEH
REQGTGIVAQFEQIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQDEY
HHCCCCEEEHHHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHEEEEECCCHHH
LGDITEMFETGAHAIMRVAATTDSLDKEERLIPWHKQTVVKVDLTEKTVLVAWPSDY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA