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The map label for this gene is cspA [H]

Identifier: 93006957

GI number: 93006957

Start: 2613225

End: 2613434

Strand: Reverse

Name: cspA [H]

Synonym: Pcryo_2133

Alternate gene names: 93006957

Gene position: 2613434-2613225 (Counterclockwise)

Preceding gene: 93006958

Following gene: 93006955

Centisome position: 85.41

GC content: 42.38

Gene sequence:

>210_bases
ATGTCAGATACTCAAAAAGGTACAGTTAAGTGGTTCAACGAAGCTAAAGGCTTTGGTTTTATCGCTCCAGAAACTGGCGC
AGACGTTTTTGCTCATTACAGCGAAATCACTGGTTCAGGCTTCAAAACTTTAGCTGAAGGCCAAGAAGTTGAGTTCACTG
TAACTCAAGGTCAAAAAGGCCCACAAGCCCATAACATCGTTGCTATCTAA

Upstream 100 bases:

>100_bases
TTAGTTATAATCCTTCGTTTTAATATTTATCGTTCAGTAGCTATTTGCAAGCGTTACCGGTCACTAGACCATTAATAAAT
TTAAAAGTAGGATTATCAAT

Downstream 100 bases:

>100_bases
TCTGTCTTTATAGACGCTTAGAGCAAGATGAAAAAAAAGCGAACCTTCGGGTTCGTTTTTTTTCGTCTACGATTTAAGAT
AAGCTATTTGCAACTAAAAG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSDTQKGTVKWFNEAKGFGFIAPETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKGPQAHNIVAI

Sequences:

>Translated_69_residues
MSDTQKGTVKWFNEAKGFGFIAPETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKGPQAHNIVAI
>Mature_68_residues
SDTQKGTVKWFNEAKGFGFIAPETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKGPQAHNIVAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=66.1538461538461, Blast_Score=92, Evalue=9e-21,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=67.6923076923077, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=52.8571428571429, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=55.7142857142857, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=60.6060606060606, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=52.8571428571429, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=51.4705882352941, Blast_Score=76, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7406; Mature: 7275

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTQKGTVKWFNEAKGFGFIAPETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKG
CCCCCCCCEEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCEECCCCCEEEEEECCCCCC
PQAHNIVAI
CCCCCEEEC
>Mature Secondary Structure 
SDTQKGTVKWFNEAKGFGFIAPETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKG
CCCCCCCEEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCEECCCCCEEEEEECCCCCC
PQAHNIVAI
CCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]