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The map label for this gene is ccmB [H]

Identifier: 93006936

GI number: 93006936

Start: 2585943

End: 2586668

Strand: Reverse

Name: ccmB [H]

Synonym: Pcryo_2112

Alternate gene names: 93006936

Gene position: 2586668-2585943 (Counterclockwise)

Preceding gene: 93006937

Following gene: 93006935

Centisome position: 84.54

GC content: 46.28

Gene sequence:

>726_bases
ATGATAGAAACAGACAGTTCATTATCAATCATAAATGCTCATACAGCTGATGTGCGCAGTATCAGTTTTATGCAGCTGTG
GCGCCGTGAGTGGCAAGTAAAGCAGCAGGGAGCGGTACAGTGGTTATATCCTTTGGTGCTATTTTTAGTAATCATTACCT
TGTTTCCGCTAGCGGTTGGAAGCGAGCCTGCACTATTACAGCGCCTTGGGGTGTCGGCGGTGTGGATTGCTGCTTTATTG
TCATTAGTGATGGGCGTTGATGGTTTGTTTAAGCCCGCGCTTGATAATGGCACATTGGCGCAATTGGTTGTCGCCAAAGC
GTCGCTGCCGTTATGGGTGCTTATCCGTTTGGTGATTCATTGGATTTTTAGTAGCGGCATTGTGGCGGTATTAAGTCTGC
TTGCTGTGCCTTTATTTCAGCTGAGTTGGTTTGAGGCATGGATATTGATGGCATCAATTGTTACAGGTAGTCCGATGCTG
TTAATGCTGTCAGCGGTTGCTAGTAGTTTGACGTTATCATTGAAGAATGGTGCTGTGCTAGTGCCTTTAATCGCTTTGCC
GATGCAGTTGCCGGTATTGATTTTTGCCACCGGTGCGGTTGATTTATTTGCTACGGGTCTTAACGGTCTGCCTATTTTGG
CGTTGTTGCTGGCAGGCAGTATTATCTCGGTGCTAGTGATGCCATGGGCGATTGCTATGACGTTAAAAATGTCGTGGTTG
AATTAA

Upstream 100 bases:

>100_bases
CAGGCAGTCGACGTTGCCAATCAAGTGCTCGATTTGTCCGATTACATGGTATGAATACTATCAATATCAGTGCGATAAGC
ATCAGTGGAAGAGTGTATAA

Downstream 100 bases:

>100_bases
AAGTTTACACTGGCATATTGTTCATTCTCTTATTAAAGCCTTTTATATTAACAACATGATGAAAACAGGCAACTTTGCTA
TAATAGTCTATTAAACACAC

Product: cytochrome c-type biogenesis protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIETDSSLSIINAHTADVRSISFMQLWRREWQVKQQGAVQWLYPLVLFLVIITLFPLAVGSEPALLQRLGVSAVWIAALL
SLVMGVDGLFKPALDNGTLAQLVVAKASLPLWVLIRLVIHWIFSSGIVAVLSLLAVPLFQLSWFEAWILMASIVTGSPML
LMLSAVASSLTLSLKNGAVLVPLIALPMQLPVLIFATGAVDLFATGLNGLPILALLLAGSIISVLVMPWAIAMTLKMSWL
N

Sequences:

>Translated_241_residues
MIETDSSLSIINAHTADVRSISFMQLWRREWQVKQQGAVQWLYPLVLFLVIITLFPLAVGSEPALLQRLGVSAVWIAALL
SLVMGVDGLFKPALDNGTLAQLVVAKASLPLWVLIRLVIHWIFSSGIVAVLSLLAVPLFQLSWFEAWILMASIVTGSPML
LMLSAVASSLTLSLKNGAVLVPLIALPMQLPVLIFATGAVDLFATGLNGLPILALLLAGSIISVLVMPWAIAMTLKMSWL
N
>Mature_241_residues
MIETDSSLSIINAHTADVRSISFMQLWRREWQVKQQGAVQWLYPLVLFLVIITLFPLAVGSEPALLQRLGVSAVWIAALL
SLVMGVDGLFKPALDNGTLAQLVVAKASLPLWVLIRLVIHWIFSSGIVAVLSLLAVPLFQLSWFEAWILMASIVTGSPML
LMLSAVASSLTLSLKNGAVLVPLIALPMQLPVLIFATGAVDLFATGLNGLPILALLLAGSIISVLVMPWAIAMTLKMSWL
N

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=219, Percent_Identity=36.0730593607306, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 26017; Mature: 26017

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETDSSLSIINAHTADVRSISFMQLWRREWQVKQQGAVQWLYPLVLFLVIITLFPLAVG
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
SEPALLQRLGVSAVWIAALLSLVMGVDGLFKPALDNGTLAQLVVAKASLPLWVLIRLVIH
CCHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
WIFSSGIVAVLSLLAVPLFQLSWFEAWILMASIVTGSPMLLMLSAVASSLTLSLKNGAVL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCEE
VPLIALPMQLPVLIFATGAVDLFATGLNGLPILALLLAGSIISVLVMPWAIAMTLKMSWL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
N
C
>Mature Secondary Structure
MIETDSSLSIINAHTADVRSISFMQLWRREWQVKQQGAVQWLYPLVLFLVIITLFPLAVG
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
SEPALLQRLGVSAVWIAALLSLVMGVDGLFKPALDNGTLAQLVVAKASLPLWVLIRLVIH
CCHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
WIFSSGIVAVLSLLAVPLFQLSWFEAWILMASIVTGSPMLLMLSAVASSLTLSLKNGAVL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCEE
VPLIALPMQLPVLIFATGAVDLFATGLNGLPILALLLAGSIISVLVMPWAIAMTLKMSWL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]