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The map label for this gene is ccmH [H]

Identifier: 93006565

GI number: 93006565

Start: 2155326

End: 2155892

Strand: Reverse

Name: ccmH [H]

Synonym: Pcryo_1741

Alternate gene names: 93006565

Gene position: 2155892-2155326 (Counterclockwise)

Preceding gene: 93006566

Following gene: 93006564

Centisome position: 70.46

GC content: 42.15

Gene sequence:

>567_bases
ATGATTATGATGCCATTAAAATCTATCACGAAAAATTTGGCAAGTTTGATCATTACTTGTCTTTTTGGCGTGCTTAGTAT
CAATGCTTATGCCGCCATTGATGTCTACGACTTTGACTCAGTGCAGCAAGAAGCCCAGTATCGTGGTCTTATCGAAGAAC
TGCGCTGTCCAAAATGTCAAAACCAAAACTTGGCAGGTTCTGATGCGCCGATTGCCCAGGATTTAAAGCAAAAAACCTAT
GACATGATTAAAGAAGGTCGTAGTGATGGTGAGATTCGCGCTTATATGCAAGAGCGCTATGGCGATTTTATTACTTATAA
GCCGCCAGTACGTCCTTCAACGTGGATATTATGGTTCTTCCCACCACTATTACTAATTGTATTAATTGTTGGCTGGTTTT
GGCAAAGTAAACGCAGTCAGCGTATTGCGCGTGGTCAAAGTGGCATCTTGGTAGACAGCGCTGCTGCGTTATCAGCAGTA
GAAGAAGCGGAACTTGATCGTCTGTTATCACGAGCTGATCGCAATAAAACAGATCATGACATCACAAGCATAGAGGACAA
AAAATGA

Upstream 100 bases:

>100_bases
GTAATTGGCAGAGCCGTATCACGCCTTGTCTGATGGTGCTCAATGAGGCTGATAAAAATAATGTCAGCCCTGATCTTGAC
CAAGTTAAGGAGGCGTGCAA

Downstream 100 bases:

>100_bases
CCCTATTTTCTACTTTTGGCTTATTTATTGCCCTAAGCTTACTGATTGCACTCGTACTGGCAGTGATCGTTATCACACCT
TGGCTAAGAGCTTCAAGGTT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MIMMPLKSITKNLASLIITCLFGVLSINAYAAIDVYDFDSVQQEAQYRGLIEELRCPKCQNQNLAGSDAPIAQDLKQKTY
DMIKEGRSDGEIRAYMQERYGDFITYKPPVRPSTWILWFFPPLLLIVLIVGWFWQSKRSQRIARGQSGILVDSAAALSAV
EEAELDRLLSRADRNKTDHDITSIEDKK

Sequences:

>Translated_188_residues
MIMMPLKSITKNLASLIITCLFGVLSINAYAAIDVYDFDSVQQEAQYRGLIEELRCPKCQNQNLAGSDAPIAQDLKQKTY
DMIKEGRSDGEIRAYMQERYGDFITYKPPVRPSTWILWFFPPLLLIVLIVGWFWQSKRSQRIARGQSGILVDSAAALSAV
EEAELDRLLSRADRNKTDHDITSIEDKK
>Mature_188_residues
MIMMPLKSITKNLASLIITCLFGVLSINAYAAIDVYDFDSVQQEAQYRGLIEELRCPKCQNQNLAGSDAPIAQDLKQKTY
DMIKEGRSDGEIRAYMQERYGDFITYKPPVRPSTWILWFFPPLLLIVLIVGWFWQSKRSQRIARGQSGILVDSAAALSAV
EEAELDRLLSRADRNKTDHDITSIEDKK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=117, Percent_Identity=47.008547008547, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=43.9024390243902, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 21392; Mature: 21392

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMMPLKSITKNLASLIITCLFGVLSINAYAAIDVYDFDSVQQEAQYRGLIEELRCPKCQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHEEEECCHHHHHHHHHHHHHHHHHCCCCCC
NQNLAGSDAPIAQDLKQKTYDMIKEGRSDGEIRAYMQERYGDFITYKPPVRPSTWILWFF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHH
PPLLLIVLIVGWFWQSKRSQRIARGQSGILVDSAAALSAVEEAELDRLLSRADRNKTDHD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ITSIEDKK
CCCCCCCC
>Mature Secondary Structure
MIMMPLKSITKNLASLIITCLFGVLSINAYAAIDVYDFDSVQQEAQYRGLIEELRCPKCQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHEEEECCHHHHHHHHHHHHHHHHHCCCCCC
NQNLAGSDAPIAQDLKQKTYDMIKEGRSDGEIRAYMQERYGDFITYKPPVRPSTWILWFF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHH
PPLLLIVLIVGWFWQSKRSQRIARGQSGILVDSAAALSAVEEAELDRLLSRADRNKTDHD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ITSIEDKK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]